Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120893.seq
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0196 + 20835495-20837255                                         30   1.8  
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    29   4.2  
04_02_0008 + 8473198-8475523,8475618-8475967                           29   4.2  
10_08_0416 + 17770384-17770992                                         28   5.6  
05_01_0051 - 345125-345693,345833-346925                               28   7.4  
07_01_0249 - 1844894-1845363,1845557-1848158                           27   9.7  

>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = +3

Query: 441 IKLYCRLGVLEQAQRRL-SGGA 503
           +KLYC LG+L++A+R L SGGA
Sbjct: 120 LKLYCSLGLLDRARRVLYSGGA 141


>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 577 VVHALQDDPTRRSCKIGFTNTCCPSAPPDSRR*ACSKTPKRQ*SLIPLPS 428
           ++HA   DP RR  + G  +   P  PP  R   CS       SL+ L S
Sbjct: 229 LIHASVIDPPRRRRREGEESVAQPPVPPPRRIATCSSEEIHLPSLVELDS 278


>04_02_0008 + 8473198-8475523,8475618-8475967
          Length = 891

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -3

Query: 630 CNLQTAKQYYSKKLGVIQLFMRSKMTQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDS 451
           C + TA   YS  + ++++F   + T     + L L   V      T+G    P  P D 
Sbjct: 781 CKISTAGDVYSFGVLLLEMFTAKRPTDTQFGSDLSLHKYVDSAFPNTIGEVLDPHMPRDE 840

Query: 450 KV 445
           KV
Sbjct: 841 KV 842


>10_08_0416 + 17770384-17770992
          Length = 202

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 243 ETRVETVPQHRRGLLHGFRAHQARARDVLAPLLAKLIRSVCFALSS 106
           + R   +P+H R   H   + Q RA+D+L  ++  L    C AL++
Sbjct: 100 QIRRPELPEHPRPAAHAADSFQERAKDILVVVVGILFGVGCGALTA 145


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 422 HFYAATTLLYAERNLF 375
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 446 TLLSLGRLGAGSTP-TVGRCTGATRVR 523
           TL++LG    G+ P ++G+CT  TRVR
Sbjct: 387 TLIALGNSLFGAIPASLGKCTSLTRVR 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,061
Number of Sequences: 37544
Number of extensions: 312652
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)