Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120893.seq
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    28   6.6  
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      28   6.6  

>Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical
           protein JC8.7 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 254 EKLMKQELRPYRNIGE-VYCTDFEHIKRALETC 159
           +K  K E   YR++ +  YC + EH+ R+L  C
Sbjct: 216 KKNKKNERTGYRDLSKNAYCINIEHLVRSLRLC 248


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 416 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 529
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 416 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 529
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,190
Number of Sequences: 27780
Number of extensions: 244269
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)