Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120892.seq
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41709 Cluster: Uncharacterized 9.4 kDa protein in PE38...    75   1e-12

>UniRef50_P41709 Cluster: Uncharacterized 9.4 kDa protein in PE38
           3'region; n=5; Nucleopolyhedrovirus|Rep: Uncharacterized
           9.4 kDa protein in PE38 3'region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 81

 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 40/63 (63%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
 Frame = -1

Query: 541 PLHYQCDINADKXXXXXXXXXXXTPNKKFIINHNHE--QVDETNKQEVVDKT---DATTY 377
           PLHYQCD NADK            PNK+FIINHNHE  QV+ETNKQ VVDKT   D  TY
Sbjct: 16  PLHYQCDNNADKDVVNAYDTIDVDPNKRFIINHNHEQQQVNETNKQ-VVDKTFINDTATY 74

Query: 376 NSC 368
           NSC
Sbjct: 75  NSC 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,354,499
Number of Sequences: 1657284
Number of extensions: 6837936
Number of successful extensions: 10174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10167
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)