Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120892.seq
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   5.1  
SB_41127| Best HMM Match : Neur_chan_memb (HMM E-Value=5.9)            28   5.1  
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_3909| Best HMM Match : Collagen (HMM E-Value=0.0013)                27   9.0  

>SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 383

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 389 VSFIDDFLFVCFIDLFVIMINYKF--FVGGQH---R*RHTHLQR 505
           V  +D +L  CF+ +F +++ Y F  ++   H   R RH H+ R
Sbjct: 293 VKAVDWYLIGCFLFVFAVLLEYTFVLYIDNVHNKKRKRHKHVPR 336


>SB_41127| Best HMM Match : Neur_chan_memb (HMM E-Value=5.9)
          Length = 90

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 389 VSFIDDFLFVCFIDLFVIMINYKF--FVGGQH---R*RHTHLQR 505
           V  +D +L  CF+ +F +++ Y F  ++   H   R RH H+ R
Sbjct: 4   VKAVDWYLIGCFLFVFAVLLEYTFVLYIDNVHNKKRKRHKHVPR 47


>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 379 MLLRQFYRRLLVCLFHRLVRDYD*L*IFCWGSTSIASYAFTTFY-LR*CHIDN 534
           ++L+ F+  L VC    LV +YD      W S SI    F+ FY  +  H+DN
Sbjct: 353 LVLKAFFALLFVCSIPNLVIEYD-----IWESDSI---MFSLFYRFKSVHVDN 397


>SB_3909| Best HMM Match : Collagen (HMM E-Value=0.0013)
          Length = 496

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 125 N*TRFTSRILRVKHDQEMTS-FVFQN*TGFTSRILRVKHNQEVMYLXFKT 271
           N T+   +  +VKHD+++   +   N T    +  +VKH+Q+V+YL   T
Sbjct: 140 NNTKTDVQAHKVKHDKDVLDLWTATNNTKTDVQAHKVKHDQDVLYLWTAT 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,113,199
Number of Sequences: 59808
Number of extensions: 221153
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)