Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120892.seq
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   2.0  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   2.0  

>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 33   RFTSRILRVKHDQEMMSFIIKIKIDVIC 116
            RF S+ L VKHDQE  SF+     D  C
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGTDASC 2066



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 134  RFTSRILRVKHDQEMTSFVFQN*T 205
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 33   RFTSRILRVKHDQEMMSFIIKIKIDVIC 116
            RF S+ L VKHDQE  SF+     D  C
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGTDASC 2066



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 134  RFTSRILRVKHDQEMTSFVFQN*T 205
            RF S+ L VKHDQE  SF+  N T
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGT 2062


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,929
Number of Sequences: 27780
Number of extensions: 183159
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)