Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120891.seq
(647 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5599D Cluster: PREDICTED: similar to CG8171-PA;... 103 3e-21
UniRef50_UPI0000DB6BEC Cluster: PREDICTED: similar to double par... 99 5e-20
UniRef50_Q16YK2 Cluster: DNA replication factor Cdt1; n=2; Culic... 97 2e-19
UniRef50_UPI0000ECAE95 Cluster: DNA replication factor Cdt1 (Dou... 97 4e-19
UniRef50_Q9I9A7 Cluster: Putative CDT1 protein; n=6; Euteleostom... 96 6e-19
UniRef50_Q9H211 Cluster: DNA replication factor Cdt1; n=13; Euth... 96 7e-19
UniRef50_Q4T6C9 Cluster: Chromosome undetermined SCAF8820, whole... 95 1e-18
UniRef50_Q7JVY2 Cluster: LD35784p; n=3; Sophophora|Rep: LD35784p... 93 7e-18
UniRef50_UPI0000660476 Cluster: DNA replication factor Cdt1 (Dou... 91 2e-17
UniRef50_UPI0000E48251 Cluster: PREDICTED: similar to CDT1 prote... 72 1e-11
UniRef50_P25980 Cluster: Nucleolar transcription factor 1-B; n=1... 36 0.64
UniRef50_UPI00015B4A3D Cluster: PREDICTED: similar to BEL12_AG t... 36 0.84
UniRef50_A7BDQ6 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_UPI00015B467D Cluster: PREDICTED: similar to GA15814-PA... 35 2.0
UniRef50_Q05BZ1 Cluster: UBTF protein; n=3; Eutheria|Rep: UBTF p... 34 3.4
UniRef50_P17480 Cluster: Nucleolar transcription factor 1; n=27;... 34 3.4
UniRef50_A6DPE1 Cluster: N-acetylgalactosamine 6-sulfate sulfata... 33 7.9
UniRef50_P25979 Cluster: Nucleolar transcription factor 1-A; n=3... 33 7.9
>UniRef50_UPI0000D5599D Cluster: PREDICTED: similar to CG8171-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG8171-PA - Tribolium castaneum
Length = 577
Score = 103 bits (248), Expect = 3e-21
Identities = 47/88 (53%), Positives = 62/88 (70%)
Frame = +2
Query: 2 NMNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIE 181
+M VL++RRR F TL+ V +H+++LLTL PPM+I +K+TRWHPEF+LEK+PEIE
Sbjct: 325 DMTSQVLIDRRRVFTETLIDKVKDYHNEFLLTLTPPMIISKDKITRWHPEFDLEKVPEIE 384
Query: 182 SAKLPELPNVEKMSTAQDVLAKARDYSN 265
LPE P EK +T + VL KAR N
Sbjct: 385 LGALPEPPFEEKFTTGKQVLEKARQMFN 412
Score = 43.6 bits (98), Expect = 0.004
Identities = 17/37 (45%), Positives = 29/37 (78%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R+ + E++ +Y+RLP++AR RN+FVTE+K VL ++
Sbjct: 471 RTVDKEKEVQLYARLPEIARLTRNLFVTEKKTVLELD 507
Score = 39.1 bits (87), Expect = 0.091
Identities = 30/84 (35%), Positives = 41/84 (48%)
Frame = +1
Query: 256 LFKCNTKMERAMEKLAHAKARGLTEQEKLVTGITDDNKKNXXXXXXXXXXXXXXXLLNPA 435
+F CNT+ME+A+ KL A+ + T E T +T
Sbjct: 410 MFNCNTRMEQALLKLKEAQQKAPTASEGPPTQVTS------------------------V 445
Query: 436 LRNLPTALLEKVKAKQAAKALEAM 507
L+ +P ALLEKV+ KQAAKAL +M
Sbjct: 446 LKGIPKALLEKVRQKQAAKALVSM 469
>UniRef50_UPI0000DB6BEC Cluster: PREDICTED: similar to double parked
CG8171-PA; n=2; Apocrita|Rep: PREDICTED: similar to
double parked CG8171-PA - Apis mellifera
Length = 724
Score = 99 bits (238), Expect = 5e-20
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 2 NMNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIE 181
+M P +LLERRR F+N LL V H ++LL L+ PM +P K+ RWHPEF++E IE
Sbjct: 440 SMGPRILLERRRKFYNILLDKVKDEHEKFLLNLETPMHVPKEKIVRWHPEFDVESCKPIE 499
Query: 182 SAKLPELPNVEKMSTAQDVLAKARDYSN 265
+ LP+ P+VEK++TA+DVL KA+ N
Sbjct: 500 QSDLPQPPHVEKITTAKDVLDKAKSLFN 527
Score = 54.8 bits (126), Expect = 2e-06
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Frame = +1
Query: 256 LFKCNTKMERAMEKLAHAK--ARGLTEQEKLVTGITDDNKKNXXXXXXXXXXXXXXXL-- 423
LF C T+ME+A+++LA AK ++ ++ ++ V T + +
Sbjct: 525 LFNCGTRMEKALQRLAEAKMTSKTVSSEKNEVNNSTQTEENIRKINITVMDTPPITPIVQ 584
Query: 424 ---LNPALRNLPTALLEKVKAKQAAKALEAM 507
L+ AL+ +P ALLEKV+AKQAAKALEAM
Sbjct: 585 NNHLSTALKGIPKALLEKVRAKQAAKALEAM 615
Score = 42.3 bits (95), Expect = 0.010
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R+ E++ +YSRLP+L + LRNIFV E+K +L +E
Sbjct: 617 RTPNAEKEAVMYSRLPELVKILRNIFVAEKKGILTLE 653
>UniRef50_Q16YK2 Cluster: DNA replication factor Cdt1; n=2;
Culicidae|Rep: DNA replication factor Cdt1 - Aedes
aegypti (Yellowfever mosquito)
Length = 713
Score = 97.5 bits (232), Expect = 2e-19
Identities = 43/88 (48%), Positives = 62/88 (70%)
Frame = +2
Query: 2 NMNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIE 181
+MNP VL+ER + F LL + H ++LL LDPP++I +KLTRWHP+F LE P+IE
Sbjct: 441 SMNPQVLIERYQKFNRILLARAKEAHEKFLLQLDPPVIIEKHKLTRWHPDFNLESCPDIE 500
Query: 182 SAKLPELPNVEKMSTAQDVLAKARDYSN 265
+P+ PNVE+ S+A+D+L+ AR+ N
Sbjct: 501 LGDVPQPPNVERFSSAKDILSTARNLFN 528
Score = 46.4 bits (105), Expect = 6e-04
Identities = 29/84 (34%), Positives = 40/84 (47%)
Frame = +1
Query: 256 LFKCNTKMERAMEKLAHAKARGLTEQEKLVTGITDDNKKNXXXXXXXXXXXXXXXLLNPA 435
LF C T ME+A+E+L K E T + + A
Sbjct: 526 LFNCGTAMEKALERLEEKKRVNAAATENPANRPTTSSITSQEETNKKKTEHP----FQTA 581
Query: 436 LRNLPTALLEKVKAKQAAKALEAM 507
L+N+P +LLEK++AKQAAKAL+ M
Sbjct: 582 LKNVPPSLLEKIRAKQAAKALDQM 605
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R E++ YSRLP++AR LRN+FVTE+KNVL +E
Sbjct: 607 RRPSQEKEAIQYSRLPEIARHLRNVFVTEKKNVLPLE 643
>UniRef50_UPI0000ECAE95 Cluster: DNA replication factor Cdt1 (Double
parked homolog) (DUP).; n=2; Gallus gallus|Rep: DNA
replication factor Cdt1 (Double parked homolog) (DUP). -
Gallus gallus
Length = 450
Score = 96.7 bits (230), Expect = 4e-19
Identities = 39/84 (46%), Positives = 64/84 (76%)
Frame = +2
Query: 2 NMNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIE 181
+++ S LLERR+ F +L+ +V +HH+ +L L PPM +P++KLTRWHP F ++++P+I
Sbjct: 358 HLSASRLLERRKEFHRSLVNIVKQHHAAFLAALSPPMEVPEDKLTRWHPRFNVDEVPDIS 417
Query: 182 SAKLPELPNVEKMSTAQDVLAKAR 253
A+LP+ P +++STAQ+VL+ AR
Sbjct: 418 PAELPQPPQEDRVSTAQEVLSAAR 441
>UniRef50_Q9I9A7 Cluster: Putative CDT1 protein; n=6;
Euteleostomi|Rep: Putative CDT1 protein - Xenopus laevis
(African clawed frog)
Length = 620
Score = 96.3 bits (229), Expect = 6e-19
Identities = 39/84 (46%), Positives = 65/84 (77%)
Frame = +2
Query: 2 NMNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIE 181
+++ S LLER++ F +L +V +HH +L +L+PPM++PD+KLTRWHP F ++++ ++
Sbjct: 361 HLSASRLLERKQLFHRSLTSIVKQHHRVFLTSLNPPMLVPDDKLTRWHPRFNVDEVLDVT 420
Query: 182 SAKLPELPNVEKMSTAQDVLAKAR 253
A+LP P VE+++TAQ+VL+KAR
Sbjct: 421 PAELPLPPQVERLTTAQEVLSKAR 444
Score = 40.3 bits (90), Expect = 0.039
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R + E++ + SRLP+LAR LRN+FV E+K L +E
Sbjct: 514 RRPQQEERLLMMSRLPELARILRNVFVAEKKPALTLE 550
>UniRef50_Q9H211 Cluster: DNA replication factor Cdt1; n=13;
Eutheria|Rep: DNA replication factor Cdt1 - Homo sapiens
(Human)
Length = 546
Score = 95.9 bits (228), Expect = 7e-19
Identities = 40/84 (47%), Positives = 63/84 (75%)
Frame = +2
Query: 5 MNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIES 184
+ S LL+RR+ F L++ V +HH +L +L P MV+P+++LTRWHP F ++++P+IE
Sbjct: 286 LTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWHPRFNVDEVPDIEP 345
Query: 185 AKLPELPNVEKMSTAQDVLAKARD 256
A LP+ P EK++TAQ+VLA+AR+
Sbjct: 346 AALPQPPATEKLTTAQEVLARARN 369
Score = 41.1 bits (92), Expect = 0.022
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R E EQ+ RLP+LAR LR++FV+ERK L +E
Sbjct: 440 RCPEQEQRLQRLERLPELARVLRSVFVSERKPALSME 476
>UniRef50_Q4T6C9 Cluster: Chromosome undetermined SCAF8820, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF8820,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 583
Score = 95.1 bits (226), Expect = 1e-18
Identities = 40/83 (48%), Positives = 62/83 (74%)
Frame = +2
Query: 5 MNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIES 184
++ S LLERRR F L+ +V +HH+ +L +L PPM +P+++LTRWHP F ++ +P +E
Sbjct: 327 LSASRLLERRRTFNLNLVSIVKQHHAAFLASLVPPMSVPEDRLTRWHPRFNVDTVPAVEP 386
Query: 185 AKLPELPNVEKMSTAQDVLAKAR 253
++LP+ P E++STAQ+VL KAR
Sbjct: 387 SQLPQPPPTERLSTAQEVLEKAR 409
Score = 35.9 bits (79), Expect = 0.84
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R+ ++ + SRLP+LAR LRN+FV E+K L +E
Sbjct: 478 RNPGRAERLLMMSRLPELARILRNVFVEEKKPALVME 514
>UniRef50_Q7JVY2 Cluster: LD35784p; n=3; Sophophora|Rep: LD35784p -
Drosophila melanogaster (Fruit fly)
Length = 743
Score = 92.7 bits (220), Expect = 7e-18
Identities = 42/88 (47%), Positives = 62/88 (70%)
Frame = +2
Query: 2 NMNPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIE 181
+MNP V+ R + F + LL M+ H Q+L + DPP++I + LTRWHP+F+LE PE+E
Sbjct: 437 SMNPHVMTARMQRFQSLLLDRAMRAHDQFLRSQDPPIII-EKALTRWHPQFDLESCPEVE 495
Query: 182 SAKLPELPNVEKMSTAQDVLAKARDYSN 265
+ LP+ PNVEK S+A+D+L+ AR+ N
Sbjct: 496 LSPLPQPPNVEKYSSAKDILSTARNLFN 523
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R +Q+ YSRLP+LAR LRN+FVTERK VL +E
Sbjct: 638 RRPSQDQEATKYSRLPELARHLRNVFVTERKGVLTLE 674
Score = 40.3 bits (90), Expect = 0.039
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +1
Query: 436 LRNLPTALLEKVKAKQAAKALEAMKGLQKLNKNITFTVDFQISPEH*ETFLSLKERMSLA 615
L+ LP +L+EK++AKQAAKALEAM ++ T H + + L
Sbjct: 613 LKGLPKSLIEKIRAKQAAKALEAMTRRPSQDQEATKYSRLPELARHLRNVFVTERKGVLT 672
Query: 616 LNIILSKFR 642
L +I+ K +
Sbjct: 673 LEVIIKKIQ 681
>UniRef50_UPI0000660476 Cluster: DNA replication factor Cdt1 (Double
parked homolog) (DUP).; n=3; Euteleostomi|Rep: DNA
replication factor Cdt1 (Double parked homolog) (DUP). -
Takifugu rubripes
Length = 404
Score = 91.1 bits (216), Expect = 2e-17
Identities = 40/80 (50%), Positives = 56/80 (70%)
Frame = +2
Query: 14 SVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIESAKL 193
S LLERRR F L+ +V HH +L +L PPM +P+++LTRWHP F ++ +P + L
Sbjct: 156 SRLLERRRTFHLNLVSIVKHHHKAFLSSLVPPMSVPEDRLTRWHPRFSVDTVPPVGLGVL 215
Query: 194 PELPNVEKMSTAQDVLAKAR 253
P+ P+ EK+STAQ+VL KAR
Sbjct: 216 PQPPHTEKLSTAQEVLEKAR 235
Score = 37.5 bits (83), Expect = 0.28
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +3
Query: 510 RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
R+S ++ + SRLP+LAR LRN+FV E+K L +E
Sbjct: 301 RTSGQAERLLMMSRLPELARILRNVFVEEKKPALLME 337
>UniRef50_UPI0000E48251 Cluster: PREDICTED: similar to CDT1 protein,
partial; n=4; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to CDT1 protein, partial -
Strongylocentrotus purpuratus
Length = 65
Score = 71.7 bits (168), Expect = 1e-11
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 QYLLTLDPPMV-IPDNKLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKAR 253
+YL +L+PP+ IPD KL RWHP+F LEK+PE+ ++ LP P V +TA+DVL KAR
Sbjct: 1 EYLASLNPPITSIPDEKLHRWHPKFPLEKIPEVPASDLPAPPKVSTFNTARDVLDKAR 58
>UniRef50_P25980 Cluster: Nucleolar transcription factor 1-B; n=15;
Euteleostomi|Rep: Nucleolar transcription factor 1-B -
Xenopus laevis (African clawed frog)
Length = 701
Score = 36.3 bits (80), Expect = 0.64
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 128 KLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRE 286
K + HPE L +I S K ELP +KM QD + +D+ + K+RE
Sbjct: 129 KYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQDFERNMAKFRE 181
>UniRef50_UPI00015B4A3D Cluster: PREDICTED: similar to BEL12_AG
transposon polyprotein; n=2; Nasonia vitripennis|Rep:
PREDICTED: similar to BEL12_AG transposon polyprotein -
Nasonia vitripennis
Length = 1132
Score = 35.9 bits (79), Expect = 0.84
Identities = 22/86 (25%), Positives = 41/86 (47%)
Frame = +2
Query: 8 NPSVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIESA 187
N S+L ++ R N L ++ K S+ ++ + +P RW + EL+KLPE++
Sbjct: 394 NLSMLSDKARTHLNMLERLKAKPSSEIIVRIIE-RCLPAATRNRWQDKLELDKLPELDDL 452
Query: 188 KLPELPNVEKMSTAQDVLAKARDYSN 265
N+ K+ T + R+ +N
Sbjct: 453 FKFIQSNIHKLQTIESSSTNNRNNNN 478
>UniRef50_A7BDQ6 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 293
Score = 35.5 bits (78), Expect = 1.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 200 LPNVEKMSTAQDVLAKARDYSNVILKWRELWRN 298
L ++E +S A D + ARD++ + +WR+LW N
Sbjct: 167 LEDIELLSAADDAIFAARDFNALAPRWRDLWDN 199
>UniRef50_UPI00015B467D Cluster: PREDICTED: similar to GA15814-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA15814-PA - Nasonia vitripennis
Length = 964
Score = 34.7 bits (76), Expect = 2.0
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 107 PMVIPDNKLTRWHPEFELEKLPEIESAKLPELPNVEKMST----AQDVLAKARDYSNVIL 274
P +PD++ R P +E++PE E K+ + PN+ + T Q+++ K + N ++
Sbjct: 450 PDKLPDDENVRQEPPVPVERVPETEKLKIKQEPNIFETVTISPKIQEIVDKINNMDNELI 509
Query: 275 K 277
K
Sbjct: 510 K 510
>UniRef50_Q05BZ1 Cluster: UBTF protein; n=3; Eutheria|Rep: UBTF
protein - Homo sapiens (Human)
Length = 313
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 128 KLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRE 286
K + HPE L +I S K ELP +KM QD + +++ + ++RE
Sbjct: 129 KYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 181
>UniRef50_P17480 Cluster: Nucleolar transcription factor 1; n=27;
Tetrapoda|Rep: Nucleolar transcription factor 1 - Homo
sapiens (Human)
Length = 764
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 128 KLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRE 286
K + HPE L +I S K ELP +KM QD + +++ + ++RE
Sbjct: 129 KYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 181
>UniRef50_A6DPE1 Cluster: N-acetylgalactosamine 6-sulfate sulfatase;
n=3; Lentisphaera araneosa HTCC2155|Rep:
N-acetylgalactosamine 6-sulfate sulfatase - Lentisphaera
araneosa HTCC2155
Length = 489
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 170 PEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRE 286
P+I++ + P+ N + D AK RDY I KWRE
Sbjct: 444 PQIKTIRKPDWVNQPQYEPHFDEFAKHRDYQGQIKKWRE 482
>UniRef50_P25979 Cluster: Nucleolar transcription factor 1-A; n=3;
Tetrapoda|Rep: Nucleolar transcription factor 1-A -
Xenopus laevis (African clawed frog)
Length = 677
Score = 32.7 bits (71), Expect = 7.9
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 128 KLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRE 286
K + HPE L +I S K ELP +KM QD + ++ + ++RE
Sbjct: 129 KYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKLEFERNLARFRE 181
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,748,902
Number of Sequences: 1657284
Number of extensions: 9362346
Number of successful extensions: 22542
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22526
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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