Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120891.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.25 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    28   1.0  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   7.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   9.4  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   9.4  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 152  FELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNV 268
            F L+++PE      P LPN++K+ST    + +  DY NV
Sbjct: 1052 FYLQQIPE------PILPNLQKLSTQYSKIVRDNDYGNV 1084


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 116 IPDNKLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDY 259
           +P  ++  W   F+  K+ EIE  + PE  + +  S   +V  + RD+
Sbjct: 49  LPQVEVPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDF 96


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 516 SETEQKYHIYSRLPDLARTL 575
           +E E KYHIY+ L  L+R L
Sbjct: 113 TERESKYHIYTLLEFLSRKL 132


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 417  HCACSRSLSSISNSVFLVIICNASN*FLLLS*APCFS 307
            HC  S  L  +S + +L+++  ASN   +LS A  FS
Sbjct: 1219 HCGISELLIHLSQAQYLILLKLASNLPEMLSIANAFS 1255


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 619 SMPRTFFLSVTKMFLSVLARSGSLL*M*YFCSVSEDLSWPRVLWLPA 479
           S+P +  L V  +F S+L   G  +    F  V+    WP + WLP+
Sbjct: 403 SLPNSLILRV--LFFSLLFIIGIHIFYFLFFHVATIQQWPFLFWLPS 447


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 91  EILRMMFHHYLQKGIKEKPSPLQKHT 14
           E+ R+ FH +L +  K + S + KH+
Sbjct: 399 EVDRIAFHKFLSENTKPEDSSIHKHS 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,740
Number of Sequences: 5004
Number of extensions: 43327
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)