Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120891.seq
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0038 - 7631462-7634428,7635975-7636250                           29   4.2  
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867...    29   4.2  
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808...    28   5.6  
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857...    27   9.7  
03_03_0017 - 13774877-13775005,13775333-13775368,13776147-137762...    27   9.7  
01_06_1071 - 34289609-34292941                                         27   9.7  
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    27   9.7  

>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 121 WYDHWRVKSKEILRMMFHHYLQKGIKEKPSPLQKHTW 11
           ++DH+R K  ++LR +  H  ++       PL+  TW
Sbjct: 561 YFDHYRCKMHDLLRYLAQHLSREECYFDQLPLEPTTW 597


>03_02_0463 -
           8673313-8673639,8674040-8674126,8674710-8674790,
           8674896-8675048,8675129-8675185,8675293-8675569,
           8675634-8675749,8676372-8676523,8676627-8676816,
           8676935-8677345
          Length = 616

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 98  LDPPMVIPDNKLTRWHPEFELEKLPE 175
           +D PM IP + +  WHP+ ++++LP+
Sbjct: 173 VDDPMQIPRSMMEGWHPQ-QIDQLPD 197


>01_06_0554 +
           30179641-30179658,30179725-30180126,30180580-30180892,
           30180966-30181358,30181442-30182427
          Length = 703

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
 Frame = +2

Query: 2   NMNP--SVLLE-RRRFFFNTL--LQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEK 166
           ++NP   VLL+ +R  F  T+  +Q ++++H   LLT D   V+   ++ +W+   +   
Sbjct: 466 HVNPLEKVLLDIQRDNFMKTISHVQGIIRNHPSDLLTADVITVVVQKEIFKWNCCLKDRD 525

Query: 167 LPEIESAKLPELPNVEKMSTAQDVLAKARDYS---NVILKWR 283
              I +A L     +++M      + K  ++S    V LKW+
Sbjct: 526 AQRIVNALLEHARKIKEMHNFNSEMRK-EEFSAKLKVHLKWQ 566


>06_03_0642 +
           23084397-23084909,23084990-23085123,23085618-23085731,
           23085929-23086112,23086212-23086280,23087319-23087576
          Length = 423

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 IPDNKLTRWHPEF-ELEKLPEIESAKLPELPNVEKMSTAQDV 238
           IPD   T   P F E   + + ++ KLP+LP++E  + A+ V
Sbjct: 269 IPDEVRTEIEPYFFEHASIVDEDNQKLPKLPDIEGANVAKYV 310


>03_03_0017 -
           13774877-13775005,13775333-13775368,13776147-13776227,
           13776935-13777006,13777136-13777219,13777323-13777376,
           13777496-13777572,13777949-13778000,13778121-13778207,
           13778466-13778520,13778600-13778700,13778800-13778988,
           13779561-13779629,13779954-13780056,13780167-13780225,
           13780548-13780685,13780803-13780895,13780972-13781043,
           13781503-13781601,13781792-13781893
          Length = 583

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 20  LLERRRFFFNTLLQVVMKHHSQYLLTL-DPPMVIPDNK 130
           LLE+   F+N L + V K       TL DPP+ +P+NK
Sbjct: 254 LLEQSLPFYNVLKRHVSKTIGSPQPTLPDPPLPVPENK 291


>01_06_1071 - 34289609-34292941
          Length = 1110

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 104 PPMVIPDNKLTRWHPEFELEKLPEIESAKLPELP 205
           PP  IP    T W  E  LE LPE+++   P  P
Sbjct: 864 PP--IPSTLRTLWISESGLESLPELQNNSCPSSP 895


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 152 FELEKLPEIESAKLPELPNVEKMSTAQD--VLAKARDYSNVILKW 280
           FE+  LPE  S   P +   EK+  A D  +LA++ D    +  W
Sbjct: 109 FEIVILPEFTSLPFPSIDLPEKVRIAVDKVILAESADRKQQLASW 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,780
Number of Sequences: 37544
Number of extensions: 251548
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)