Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120891.seq
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)                      79   2e-15
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   2e-15
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_23878| Best HMM Match : Big_2 (HMM E-Value=0.65)                    27   9.9  

>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
          Length = 281

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 32/80 (40%), Positives = 54/80 (67%)
 Frame = +2

Query: 14  SVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIESAKL 193
           S LL R++   N LL+V  +HH  +L  L+ P+ +  +K+ RWHP+F+L+++P++E   L
Sbjct: 103 SELLSRKKIMQNALLKVTKEHHQTFLQNLEEPISVDSDKIIRWHPQFKLDEVPDLEQGAL 162

Query: 194 PELPNVEKMSTAQDVLAKAR 253
           PE P V+  ++A+DVL + R
Sbjct: 163 PEAPVVKTFTSAKDVLDRGR 182


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 32/80 (40%), Positives = 54/80 (67%)
 Frame = +2

Query: 14   SVLLERRRFFFNTLLQVVMKHHSQYLLTLDPPMVIPDNKLTRWHPEFELEKLPEIESAKL 193
            S LL R++   N LL+V  +HH  +L  L+ P+ +  +K+ RWHP+F+L+++P++E   L
Sbjct: 787  SELLSRKKIMQNALLKVTKEHHQTFLQNLEEPISVDSDKIIRWHPQFKLDEVPDLEQGAL 846

Query: 194  PELPNVEKMSTAQDVLAKAR 253
            PE P V+  ++A+DVL + R
Sbjct: 847  PEAPVVKTFTSAKDVLDRGR 866



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 510  RSSETEQKYHIYSRLPDLARTLRNIFVTERKNVLGIE 620
            R    ++K  +  RLP+L R L+  F TERK  + +E
Sbjct: 939  RDPGLDKKMTMRERLPELCRILKTYFTTERKAAIPLE 975


>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 585 KCFLVFWRDLEVYCKCDIFVQFLKTFHGLECFGCLLSFNFLQESCW*ITQGRIEKCHCAC 406
           +C  V  R L   C+C + V+ L   HG +C   +L    + E    + +G + +C C  
Sbjct: 707 ECQCVLVRGLMHECQC-VVVRGL--MHGCQC---VLVRGLMHECQCVLVRGSMNECQCVL 760

Query: 405 SRSLSSISNSVFLV 364
            R L  +S    LV
Sbjct: 761 VRGLMHVSCQCVLV 774


>SB_23878| Best HMM Match : Big_2 (HMM E-Value=0.65)
          Length = 1060

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 83  QYLLTLDPPMVIPDNKLTRWHPEFE 157
           Q +   DP +VIP+  +  WHP+ E
Sbjct: 340 QVVEIFDPVVVIPEELVFPWHPQME 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,739
Number of Sequences: 59808
Number of extensions: 316278
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)