Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120891.seq
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41109-16|AAO12424.1|  440|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 457 LLEKVKAKQAAKALEAMKGLQKLNKNITFTVDFQISPEH 573
           LLEKV  K +A   +  K     N+N T  +D  ++ EH
Sbjct: 477 LLEKVSTKNSADECDWRKNFSNSNRNYTLKLDTNVTIEH 515


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 149  EFELEKLPEIESAKLPELPN-VEKMSTAQDV 238
            EFELE  PE ESA +PE+   +EK+    D+
Sbjct: 1376 EFELESAPEEESAAIPEVQEPLEKVEVQPDL 1406


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 149  EFELEKLPEIESAKLPELPN-VEKMSTAQDV 238
            EFELE  PE ESA +PE+   +EK+    D+
Sbjct: 1376 EFELESAPEEESAAIPEVQEPLEKVEVQPDL 1406


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 149  EFELEKLPEIESAKLPELPN-VEKMSTAQDV 238
            EFELE  PE ESA +PE+   +EK+    D+
Sbjct: 1376 EFELESAPEEESAAIPEVQEPLEKVEVQPDL 1406


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 170 PEIESAKLPELPNVEKMSTAQDVLAKARDY 259
           PE E +K P+LPNV ++ +A  V     DY
Sbjct: 484 PEPEFSKTPKLPNVIRVQSADHVARSTVDY 513


>U41109-16|AAO12424.1|  440|Caenorhabditis elegans Hypothetical
           protein F52E1.13b protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 439 RNLPTALLEKVKAKQAAKALEAMKGLQKLNKNITFT 546
           RN+  A+++KV  K++AKA+E     + L  N  ++
Sbjct: 185 RNIKRAIMKKVFKKKSAKAIEMRTRSKSLGSNAIYS 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,560
Number of Sequences: 27780
Number of extensions: 242384
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)