Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120891.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 PNVEKMSTAQDVLAKARDYSNVILK 277
           PNV++ +  QD+L K +D   ++ K
Sbjct: 18  PNVKQRAADQDLLNKQQDVIQLLQK 42


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 164 KLPEIESAKLPELPNVEKMS 223
           +LP    A +P +PN+  MS
Sbjct: 408 QLPPSAGAPMPPIPNMSNMS 427


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 434 PCVIYQQLSWRKLKLSRQPKHSR 502
           PCV+   LSW    L+R+    R
Sbjct: 223 PCVLLVVLSWVSFWLNREATADR 245


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 161 EKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRELWR 295
           EKL   +   L E  + ++ S +++   K+    N   K+RE W+
Sbjct: 20  EKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 161 EKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRELWR 295
           EKL   +   L E  + ++ S +++   K+    N   K+RE W+
Sbjct: 20  EKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 161 EKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRELWR 295
           EKL   +   L E  + ++ S +++   K+    N   K+RE W+
Sbjct: 20  EKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 161 EKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNVILKWRELWR 295
           EKL   +   L E  + ++ S +++   K+    N   K+RE W+
Sbjct: 20  EKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETWK 64


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 85  LRMMFHHYLQKGIKEKPSPLQKH 17
           LR +    ++K   +KP+P+QKH
Sbjct: 203 LRNIVLDNIKKSGYKKPTPVQKH 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,651
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)