Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120891.seq
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09520.1 68418.m01101 hydroxyproline-rich glycoprotein family...    33   0.22 
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family...    31   0.50 
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    29   2.7  
At5g39750.1 68418.m04815 MADS-box family protein contains Pfam p...    29   3.5  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    29   3.5  
At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ...    28   6.1  
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    28   6.1  
At5g07650.1 68418.m00876 formin homology 2 domain-containing pro...    27   8.1  

>At5g09520.1 68418.m01101 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 130

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL KLPEI   ++P+LP ++K
Sbjct: 61  PKLELPKLPEIPKPEMPKLPEIQK 84



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEKM 220
           P+ E+ KLPEI+  +LP  P + KM
Sbjct: 72  PKPEMPKLPEIQKPELPTFPELPKM 96



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ E+ KLPE    +LP+LP + K
Sbjct: 50  PKPEMPKLPEFPKLELPKLPEIPK 73


>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 370

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEKMSTAQ 232
           P+ E  K+PEI+  +LP++P + KM   Q
Sbjct: 206 PKLEAPKVPEIQKPELPKMPELPKMPEIQ 234



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEKMSTAQ 232
           P+ E  K+PEI+  +LP++P + KM   Q
Sbjct: 245 PKLEAPKVPEIQKPELPKMPELPKMPEIQ 273



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 101 DPPMVIPDNKLTRWHPEFELEKLPEIESAKLPELPNVEK 217
           DP   IP  KL    P+FE+ KLPE    +LP+LP   K
Sbjct: 40  DPKPEIP--KLPEL-PKFEVPKLPEFPKPELPKLPEFPK 75



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 155 ELEKLPEIESAKLPELPNVEKM 220
           EL K+PEI+  +LP+LP V K+
Sbjct: 226 ELPKMPEIQKPELPKLPEVPKL 247



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL K PEI   +LP++P + K
Sbjct: 107 PKLELPKFPEIPKPELPKMPEIPK 130



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL K+PEI   +LP++P ++K
Sbjct: 118 PKPELPKMPEIPKPELPKVPEIQK 141



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL K+PEI+  +LP++P + K
Sbjct: 129 PKPELPKVPEIQKPELPKMPEIPK 152



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 155 ELEKLPEIESAKLPELPNVEK 217
           EL K+PEI+  +LP++P ++K
Sbjct: 265 ELPKMPEIQKPELPKMPEIQK 285



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL K+PEI   +LP++P + K
Sbjct: 74  PKPELPKIPEIPKPELPKVPEIPK 97



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 155 ELEKLPEIESAKLPELPNVEK 217
           EL K+PEI+  +LP++P V K
Sbjct: 276 ELPKMPEIQKPELPKVPEVPK 296



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL KLPE    +LP++P + K
Sbjct: 63  PKPELPKLPEFPKPELPKIPEIPK 86



 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ EL K+PE+   +LP++P + K
Sbjct: 317 PKPELPKIPEVPKPELPKVPEITK 340



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 146 PEFELEKLPEIESAKLPELPNVEK 217
           P+ E  K PEI   +LP++P V K
Sbjct: 306 PKSEAPKFPEIPKPELPKIPEVPK 329


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related
            similar to RNA-dependent ATPase/helicase Cdc28p
            [Schizosaccharomyces pombe] GI:1439562; contains Pfam
            profiles PF04408: Helicase associated domain (HA2),
            PF00271: Helicase conserved C-terminal domain, weak hit
            to PF00097: Zinc finger, C3HC4 type (RING finger),
            PF01485: IBR domain
          Length = 1775

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 595  SVTKMFLSVLARSGSLL*M*YFCSVSEDLSWPR 497
            SV K+F S L+  G +  M YF SV+  + WPR
Sbjct: 1141 SVLKLFPS-LSTGGGIFKMPYFSSVTAKIRWPR 1172


>At5g39750.1 68418.m04815 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL81
          Length = 355

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 119 PDNKLTRWHPEFELEKLPEIESAKLPELPNVEKMSTAQDVLAKARDYSNV 268
           PD +L  W PE E  +   +  ++L E    +K  T  D L K +D +N+
Sbjct: 57  PDGELKTWPPEREKVEDIALRYSQLNEALRRKKSVTLYDFLNKKKDKTNL 106


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
            domain-containing protein / zinc finger protein-related
            similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
            helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
            contains Pfam profiles PF04408: Helicase associated
            domain (HA2), PF00271: Helicase conserved C-terminal
            domain, PF00097: Zinc finger, C3HC4 type (RING finger),
            PF01485: IBR domain
          Length = 1787

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 595  SVTKMFLSVLARSGSLL*M*YFCSVSEDLSWPR 497
            SV K+F S L+  G +  M YF SV+  + WPR
Sbjct: 1138 SVLKVFPS-LSTGGGIFKMPYFSSVTAKIRWPR 1169


>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 274 KMERAMEKLAHAKARGLTEQEK 339
           ++E+  E ++HAKA G+TE+E+
Sbjct: 773 QLEQLQELISHAKATGVTEEEQ 794


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 43  EKPSPLQKHTW 11
           EKPSP+Q HTW
Sbjct: 135 EKPSPIQSHTW 145


>At5g07650.1 68418.m00876 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 815

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 466 KVKAKQAAKALEAM-KGLQKLNKNIT 540
           K++ K  A+ ++A+ KGL+KLNK +T
Sbjct: 691 KIQLKSLAEEIQAITKGLEKLNKQLT 716


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,138
Number of Sequences: 28952
Number of extensions: 218163
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)