Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120890.seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.9  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   2.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.0  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   8.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.7  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 603 NCPRKHGVF 577
           +CPRKHG F
Sbjct: 106 HCPRKHGYF 114


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 35  ITDLLQVFKYKYNNRTQYECGVNA 106
           + D + +  Y Y+   Q + G+NA
Sbjct: 193 VVDFINIMSYDYHTADQPQTGLNA 216


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 614 CLSSTVPENTAYSYVSEWLY 555
           C+  +VP    Y+++ EW +
Sbjct: 48  CVKDSVPMTCRYTFLLEWYH 67


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 130 GHRMYKLHEQQRAKRHVDRHL 192
           GH M + H Q     H  +H+
Sbjct: 168 GHHMQEQHPQHHQPHHQQQHM 188


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 130 GHRMYKLHEQQRAKRHVDRHL 192
           GH M + H Q     H  +H+
Sbjct: 170 GHHMQEQHPQHHQPHHQQQHM 190


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 85  LCSIVVFVFKHLQQICNVNLLFVHN 11
           LC+ + + F  L + CN+ +L   N
Sbjct: 51  LCTHINYAFVGLDKDCNIQVLDEEN 75


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 140 CINYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQQSDYRPCP 265
           C+ + N  +Q V   D    + LR +   DP +    +R  P
Sbjct: 155 CVTFSNLGIQCVKKKDIESALRLREEIKVDPFMTGFSHRNQP 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,023
Number of Sequences: 336
Number of extensions: 2532
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)