Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120890.seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    29   0.58 
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   7.1  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    25   7.1  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.4  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 26  KIYITDLLQVF-KYKYNNRTQYECGVNASYAIDPVTAIECINYMNSNVQSVTLTDTCPEI 202
           +I   D L+ F +  + +  QY+    A   ++   A+ C++Y+N N+ +   T  C EI
Sbjct: 389 RISFADYLETFLQGDWLSSPQYKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEI 448


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 362 NEL-FTASXSNSVVXXHXYLTYLNSVSSTTYPSTDTVCNRSA 240
           NE+  T+S ++S V    YLT  N  +  T+P +   C+ S+
Sbjct: 98  NEVNLTSSTTSSCVKPSPYLTNCNLKNKDTFPVSKNNCSLSS 139


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 635 NYYKCPLCLSSTVPENTAYSYVSEW 561
           NY  CPLC+     E   Y   ++W
Sbjct: 129 NYVCCPLCMEQHCIELLTYQLFAKW 153


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  MDKQKIYITDLLQVFKYKYNNRTQYE 91
           ++K+ I  TDL   FK++ N+   YE
Sbjct: 358 LEKETISHTDLHHTFKHEVNSSNNYE 383


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 644 FHCNYYKCPLCLSSTVPENTAYSY 573
           FH  ++ C LC +   P ++ Y Y
Sbjct: 199 FHIEHFTCSLCYTVFGPNDSYYEY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,916
Number of Sequences: 5004
Number of extensions: 40011
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)