Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120890.seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0527 - 4177928-4178235,4178849-4181438                           28   5.6  
08_01_0208 + 1662101-1662223,1663130-1663243,1663327-1663468,166...    28   5.6  
05_02_0015 - 5605403-5605574,5605653-5605840,5605934-5606539,560...    28   7.4  
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788...    28   7.4  

>12_01_0527 - 4177928-4178235,4178849-4181438
          Length = 965

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 245 SDYRPCPWTGMSCSTPS 295
           SD  PC W G+SCS+ S
Sbjct: 68  SDSNPCRWDGVSCSSSS 84


>08_01_0208 +
           1662101-1662223,1663130-1663243,1663327-1663468,
           1663496-1663610,1663936-1664077,1664216-1664313,
           1664396-1664525,1664740-1664884,1665163-1665389
          Length = 411

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 139 FDGRHRIYSV*RVHAALVLCSIVVFVFK 56
           FD R + ++V +V AALVL ++ +F+ K
Sbjct: 4   FDARRKPHNVGKVIAALVLTTLCIFILK 31


>05_02_0015 -
           5605403-5605574,5605653-5605840,5605934-5606539,
           5606626-5607072,5607151-5607173,5607528-5607879
          Length = 595

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/76 (21%), Positives = 31/76 (40%)
 Frame = -1

Query: 597 PRKHGVFVC*RMVVLTLXAQTAPFXPLNVLNLARFGRDDVSTRLLXCPRSHIRKCXRAAT 418
           PR     +  R  + T+     P  P  +L+  RF    +  +    P+  I++   A  
Sbjct: 21  PRTGNKILKERFRITTVNQVGLPIGPRKILSRFRFICGVIGRQKFSIPQDDIKQVPAAEK 80

Query: 417 PASWXRNHETVQWPIE 370
            ++W    E+  +P+E
Sbjct: 81  DSAWLAFKESFDYPVE 96


>03_06_0209 -
           32377045-32378008,32378086-32378210,32378772-32378816,
           32379009-32379295,32379778-32381509,32381631-32381971,
           32383753-32383876,32384484-32384722,32385156-32385534
          Length = 1411

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 176 TLTDTCPEIELRFQQFFDPPLQQSDYRPCPWTGMSCS 286
           TLT   P       + F   L  S +  CPW G SC+
Sbjct: 239 TLTSWSPAEVSNAGEAFAEQLDASHHNSCPWRGNSCA 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,421
Number of Sequences: 37544
Number of extensions: 254438
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)