Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120890.seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28318| Best HMM Match : GLTT (HMM E-Value=6.9e-26)                  29   4.3  
SB_6511| Best HMM Match : GLTT (HMM E-Value=1.6e-25)                   27   9.9  

>SB_28318| Best HMM Match : GLTT (HMM E-Value=6.9e-26)
          Length = 422

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 122 PVTAIEC----INYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQQSDYRPCPWTGMSC 283
           P+T ++C    +  M+ +   +T  D C ++ L      D PL   DY   P T M C
Sbjct: 327 PLTTMDCHDSPLTAMDCHDLPLTTMD-CHDLPLTTMDCHDSPLTTMDYHDLPLTTMDC 383



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +2

Query: 122 PVTAIEC----INYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQQSDYRPCPWTGMSC 283
           P+T ++C    +  M  +   +T  D C ++ L      D PL   DY   P T M C
Sbjct: 137 PLTTMDCRDLPLTTMGCHDLPLTTMD-CHDLPLTTMDCHDLPLTTMDYHDSPLTTMDC 193


>SB_6511| Best HMM Match : GLTT (HMM E-Value=1.6e-25)
          Length = 334

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 122 PVTAIEC----INYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQQSDYRPCPWTGMSC 283
           P+T ++C    +  M+ N   +T T  C ++ L      D PL   DY   P T M C
Sbjct: 47  PLTTMDCHDLPLTTMDCNDLPLT-TMGCHDLPLTTMGCHDLPLTTMDYHDLPLTTMDC 103



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +2

Query: 122 PVTAIEC----INYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQQSDYRPCPWTGMSC 283
           P+T ++C    +  M  +   +T  D C ++ L      D PL   DY   P T M C
Sbjct: 177 PLTTMDCRDLPLTTMGCHDLPLTTMD-CHDLPLTTMDCHDLPLTTMDYHDSPLTTMDC 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,906
Number of Sequences: 59808
Number of extensions: 327572
Number of successful extensions: 1089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)