Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120890.seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 335 NSVVXXHXYLTYLNSVSSTTYPSTDTVCNRSAVAADQKIAETSIQFR 195
           +SV+    YLT+ +S      PST  +   S+V +  +++  S++ R
Sbjct: 802 DSVIPRILYLTWYSSNGDIKVPSTKVLAMISSVKSFMELSLRSVKDR 848


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 103 VHAALVLCSIVVFVFKHLQQICNVNLL 23
           V A + +C+  VFVF  L + C VN++
Sbjct: 307 VDAFMSVCT--VFVFMALMEYCLVNIV 331


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +1

Query: 229 SAATAERLQTVSVDGYVVLDTELRYVKY 312
           S ++   L  +S+D Y+ +   ++Y K+
Sbjct: 270 STSSIFNLVAISIDRYIAVTQPIKYAKH 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,687
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)