Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120890.seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34420.1 68414.m04275 leucine-rich repeat family protein / pr...    30   1.5  
At4g11820.2 68417.m01882 hydroxymethylglutaryl-CoA synthase / HM...    29   3.5  
At4g11820.1 68417.m01881 hydroxymethylglutaryl-CoA synthase / HM...    29   3.5  
At5g62710.1 68418.m07869 leucine-rich repeat family protein / pr...    28   4.7  
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P...    28   6.1  
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    27   8.1  

>At1g34420.1 68414.m04275 leucine-rich repeat family protein /
           protein kinase family protein contains leucine rich
           repeat (LRR) domains, Pfam:PF00560; contains protein
           kinase domain, Pfam:PF00069
          Length = 966

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 173 VTLTDTCPEIELR-FQQFFDPPLQQSDYRPCPWTGMSCSTPS*DTSNI 313
           ++L  T   IEL  F    D  L  S+  PC W G+ CS P  D S++
Sbjct: 39  LSLNQTNTMIELSSFLNISDWNLPGSERNPCSWNGVLCSLP--DNSSV 84


>At4g11820.2 68417.m01882 hydroxymethylglutaryl-CoA synthase /
           HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A
           synthase identical to Hydroxymethylglutaryl-CoA synthase
           (EC 4.1.3.5) (HMG-CoA synthase)
           (3-hydroxy-3-methylglutaryl coenzyme A synthase)
           (Swiss-Prot:P54873) [Arabidopsis thaliana]
          Length = 461

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 11  VMDKQKIYITDLLQVFKYKYNNRTQYECGVNASYAIDPVTAIECINYMNSN 163
           V+DK K   T L+Q+F+   N   +     NA Y       + C+N++ SN
Sbjct: 85  VIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYG-GTAALLNCVNWVESN 134


>At4g11820.1 68417.m01881 hydroxymethylglutaryl-CoA synthase /
           HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A
           synthase identical to Hydroxymethylglutaryl-CoA synthase
           (EC 4.1.3.5) (HMG-CoA synthase)
           (3-hydroxy-3-methylglutaryl coenzyme A synthase)
           (Swiss-Prot:P54873) [Arabidopsis thaliana]
          Length = 406

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 11  VMDKQKIYITDLLQVFKYKYNNRTQYECGVNASYAIDPVTAIECINYMNSN 163
           V+DK K   T L+Q+F+   N   +     NA Y       + C+N++ SN
Sbjct: 30  VIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYG-GTAALLNCVNWVESN 79


>At5g62710.1 68418.m07869 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 604

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 239 QQSDYRPCPWTGMSCS 286
           + SD  PC WTG+SC+
Sbjct: 49  KDSDESPCSWTGVSCN 64


>At1g26230.1 68414.m03200 chaperonin, putative similar to
           SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
           subunit, chloroplast precursor (60 kDa chaperonin beta
           subunit, CPN-60 beta) [Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 611

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +2

Query: 62  YKYNN-RTQYECGVNASYAIDPVTAIECINYMNSNVQSVTLTDTCPEIELRF---QQFFD 229
           Y YN  + QYE  + A   IDP   + C     S+V    LT  C  +E++    +   +
Sbjct: 517 YGYNAAKNQYEDLMLAGI-IDPTKVVRCCLEHASSVAQTFLTSDCVVVEIKEIKPRPIIN 575

Query: 230 PPLQQS 247
           PPL  S
Sbjct: 576 PPLPTS 581


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 619 PFVCRQLSPKTRRIRMLANGCIDFXS 542
           P++C++  P   R+R   N C+D  S
Sbjct: 59  PWICKRSGPSEARMRCCRNQCVDVLS 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,731
Number of Sequences: 28952
Number of extensions: 205029
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)