Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120889.seq
         (590 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    31   0.037
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    29   0.085
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    29   0.085
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    29   0.085
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    29   0.085
AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsi...    24   4.2  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 30.7 bits (66), Expect = 0.037
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +2

Query: 95  MRECISVHVGPSXESRSVMPAGSXTAWSTAS 187
           MRECISVHVG +       P    T WS AS
Sbjct: 1   MRECISVHVGQAGVQIG-NPCWDCTVWSMAS 30


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 0.085
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
           C  LQGF ++   GGGTG  +  LL+ +   +Y
Sbjct: 23  CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 55



 Score = 29.1 bits (62), Expect = 0.11
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 415 HYTIGKEIVDLVLDRIRK 468
           HYT G E+VD VLD +RK
Sbjct: 1   HYTEGAELVDAVLDVVRK 18


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 0.085
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
           C  LQGF ++   GGGTG  +  LL+ +   +Y
Sbjct: 23  CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 55



 Score = 29.1 bits (62), Expect = 0.11
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 415 HYTIGKEIVDLVLDRIRK 468
           HYT G E+VD VLD +RK
Sbjct: 1   HYTEGAELVDAVLDVVRK 18


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 0.085
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
           C  LQGF ++   GGGTG  +  LL+ +   +Y
Sbjct: 23  CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 55



 Score = 29.1 bits (62), Expect = 0.11
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 415 HYTIGKEIVDLVLDRIRK 468
           HYT G E+VD VLD +RK
Sbjct: 1   HYTEGAELVDAVLDVVRK 18


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 29.5 bits (63), Expect = 0.085
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
           C  LQGF ++   GGGTG  +  LL+ +   +Y
Sbjct: 23  CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY 55



 Score = 29.1 bits (62), Expect = 0.11
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 415 HYTIGKEIVDLVLDRIRK 468
           HYT G E+VD VLD +RK
Sbjct: 1   HYTEGAELVDAVLDVVRK 18


>AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsive
           serine proteaselike protein protein.
          Length = 600

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = -2

Query: 457 CP-KPNLQFPFQWCSDHGHICCP 392
           CP +  L      CSD  H CCP
Sbjct: 46  CPDQEQLDLRAATCSDATHYCCP 68


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,807
Number of Sequences: 2352
Number of extensions: 11488
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 56768445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)