Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120889.seq
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.42 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   5.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 120 TCTEMHSRILDLEFFSMLKCRMEL*SVVVQRDRL 19
           T TE+ SRI  +E  SML     L   + +R+R+
Sbjct: 432 TFTEICSRITPMEVVSMLNAMYSLFDTLTERNRV 465


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 160 PSRHYRSGL 134
           P RHYRSGL
Sbjct: 139 PLRHYRSGL 147


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/52 (21%), Positives = 20/52 (38%)
 Frame = +1

Query: 232 ETILSTLSQRDGAGKHVXRXVFVDLEPTVVDEVRTGTYRQLFHXEQXXTGKE 387
           E +L+    +    K+  R  F  +EP + ++  TG             G+E
Sbjct: 134 EEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGRE 185


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 62  HLSIEKNSKSKMRECI 109
           H  +EKN ++ +R C+
Sbjct: 53  HNELEKNRRAHLRNCL 68


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 268 AGKHVXRXVFVDLEPTVVDEVRTGTYRQL 354
           A  H+    + D+EPTV         RQL
Sbjct: 239 AQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,041
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)