Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120889.seq
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 161 2e-40
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 161 2e-40
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 161 3e-40
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 161 3e-40
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 159 2e-39
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 159 2e-39
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 146 7e-36
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 93 1e-19
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 92 2e-19
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 89 3e-18
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 88 4e-18
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 88 5e-18
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 87 1e-17
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 86 2e-17
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 84 6e-17
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 84 6e-17
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 55 3e-08
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 55 4e-08
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote... 28 4.1
At3g46980.2 68416.m05102 transporter-related low similarity to b... 27 7.1
At3g46980.1 68416.m05101 transporter-related low similarity to b... 27 7.1
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 161 bits (392), Expect = 2e-40
Identities = 76/115 (66%), Positives = 83/115 (72%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GNACWEL CLEHGI G + +T GAGKHV R VFVDLEP
Sbjct: 13 GIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYTIGKEIVDL LDRIRKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VDYGKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 161 bits (392), Expect = 2e-40
Identities = 76/115 (66%), Positives = 83/115 (72%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GNACWEL CLEHGI G + +T GAGKHV R VFVDLEP
Sbjct: 13 GIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYTIGKEIVDL LDRIRKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VDYGKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 161 bits (391), Expect = 3e-40
Identities = 76/115 (66%), Positives = 83/115 (72%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GNACWEL CLEHGI G + +T GAGKHV R VFVDLEP
Sbjct: 13 GIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYTIGKEIVDL LDRIRKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VDYGKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 161 bits (391), Expect = 3e-40
Identities = 76/115 (66%), Positives = 83/115 (72%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GNACWEL CLEHGI G + +T GAGKHV R VFVDLEP
Sbjct: 13 GIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYTIGKEIVDL LDRIRKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VDYGKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 159 bits (385), Expect = 2e-39
Identities = 73/115 (63%), Positives = 82/115 (71%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GN+CWEL CLEHGI T +T GAGKHV R VFVDLEP
Sbjct: 13 GIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYT+GKEIVDL LDR+RKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VDYGKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 159 bits (385), Expect = 2e-39
Identities = 73/115 (63%), Positives = 82/115 (71%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GN+CWEL CLEHGI T +T GAGKHV R VFVDLEP
Sbjct: 13 GIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYT+GKEIVDL LDR+RKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VDYGKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 146 bits (355), Expect = 7e-36
Identities = 65/115 (56%), Positives = 80/115 (69%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G+Q+GN+CWEL CLEHGI + +T +G+HV R VF+DLEP
Sbjct: 13 GIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEP 72
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
TV+DEVRTGTYRQLFH EQ +GKE A N +ARGHYT+G+EIVD L+R+RKLAD
Sbjct: 73 TVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLAD 127
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDYGKK 589
CTGLQGFL+ GGGTG + LL+ER VD+GKK
Sbjct: 129 CTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKK 164
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 93.5 bits (222), Expect = 1e-19
Identities = 46/115 (40%), Positives = 68/115 (59%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG+ WE+ C EHGI + T +E I ++ G G++V R V +DLEP
Sbjct: 13 GNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASG-GRYVPRAVLMDLEP 71
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D +R+G + Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 72 GTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAE 126
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 128 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 160
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 92.3 bits (219), Expect = 2e-19
Identities = 45/115 (39%), Positives = 67/115 (58%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG+ WE+ C EHG+ + +E I ++ G G++V R V +DLEP
Sbjct: 13 GNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASG-GRYVPRAVLMDLEP 71
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D +R+G Y Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 72 GTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAE 126
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 128 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 160
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 88.6 bits (210), Expect = 3e-18
Identities = 47/115 (40%), Positives = 67/115 (58%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG WE+ C EHGI + P +E I ++ G GK+V R V +DLEP
Sbjct: 13 GNQIGAKFWEVICDEHGIDHTGQYVGDS-PLQLERIDVYFNEASG-GKYVPRAVLMDLEP 70
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D +R+G + Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 71 GTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 491 LQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
LQGF + GGGTG + LL+ + +Y
Sbjct: 130 LQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 88.2 bits (209), Expect = 4e-18
Identities = 45/115 (39%), Positives = 65/115 (56%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG+ WE+ C EHGI + +E + + G++V R + +DLEP
Sbjct: 13 GNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQ-LERV-NVYYNEASCGRYVPRAILMDLEP 70
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D VRTG Y Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 71 GTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAE 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 87.8 bits (208), Expect = 5e-18
Identities = 47/115 (40%), Positives = 66/115 (57%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG WE+ C EHGI T +E I ++ G GK+V R V +DLEP
Sbjct: 13 GNQIGAKFWEVICGEHGIDQTGQSCGDTDLQ-LERINVYFNEASG-GKYVPRAVLMDLEP 70
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D +R+G + Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 71 GTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 86.6 bits (205), Expect = 1e-17
Identities = 45/115 (39%), Positives = 64/115 (55%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG WE+ C EHGI + + +E + + G+ V R V +DLEP
Sbjct: 13 GNQIGAKFWEVVCAEHGIDSTGRYQGENDLQ-LERV-NVYYNEASCGRFVPRAVLMDLEP 70
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D VR+G Y Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 71 GTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 85.8 bits (203), Expect = 2e-17
Identities = 45/115 (39%), Positives = 65/115 (56%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG+ WE+ LEHGI + +E + + G++V R V +DLEP
Sbjct: 13 GNQIGSKFWEVVNLEHGIDQTGRYVGDSELQ-LERV-NVYYNEASCGRYVPRAVLMDLEP 70
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
+D VR+G Y Q+F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 71 GTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 84.2 bits (199), Expect = 6e-17
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETI----LSTLSQRDGAGKHVXRXVFV 300
G QIG WE+ C EHGI P R +G + ++ G+ V R V +
Sbjct: 13 GNQIGAKFWEVVCAEHGID------PTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLM 66
Query: 301 DLEPTVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
DLEP +D +R+G Y Q F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 67 DLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 84.2 bits (199), Expect = 6e-17
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETI----LSTLSQRDGAGKHVXRXVFV 300
G QIG WE+ C EHGI P R +G + ++ G+ V R V +
Sbjct: 13 GNQIGAKFWEVVCAEHGID------PTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLM 66
Query: 301 DLEPTVVDEVRTGTYRQLFHXEQXXTGKEXAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
DLEP +D +R+G Y Q F + G+ AGN +A+GHYT G E++D VLD +RK A+
Sbjct: 67 DLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 482 CTGLQGFLISTPXGGGTGLWVHLLLMERFXVDY 580
C LQGF + GGGTG + LL+ + +Y
Sbjct: 127 CDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG W+ CLEHGI + G + Q D ++ R + +DLEP
Sbjct: 14 GNQIGMEFWKQLCLEHGI-SKDGILEDFATQGGDRKDVFFYQADDQ-HYIPRALLIDLEP 71
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKE--XAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
V++ ++ G YR L++ E AGN +A G++ GK + + ++D I + AD
Sbjct: 72 RVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREAD 127
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 54.8 bits (126), Expect = 4e-08
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Frame = +1
Query: 133 GVQIGNACWELXCLEHGIPALMAXXPQTRPSGVETILSTLSQRDGAGKHVXRXVFVDLEP 312
G QIG W+ CLEHGI + G + Q D ++ R + +DLEP
Sbjct: 14 GNQIGMEFWKQLCLEHGI-SKDGILEDFATQGGDRKDVFFYQADDQ-HYIPRALLIDLEP 71
Query: 313 TVVDEVRTGTYRQLFHXEQXXTGKE--XAGNKYARGHYTIGKEIVDLVLDRIRKLAD 477
V++ ++ G YR L++ E AGN +A G++ GK + + ++D I + AD
Sbjct: 72 RVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEIMDMIDREAD 127
>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
kinase, putative
Length = 686
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = -3
Query: 156 AGITDLDSXLGPTCTEMHSRILDLEFFSM-------LKCRMEL*SVVVQRDRLSGLVP 4
+GI DL G TC + +ILDL +S+ L +L S+++ R+ SG +P
Sbjct: 54 SGINDLCYWSGVTCVDGKVQILDLSGYSLEGTLAPELSQLSDLRSLILSRNHFSGGIP 111
>At3g46980.2 68416.m05102 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 469
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 452 WTESXSXLTQCTGLQGFLISTPXGGGT 532
W++S S + Q + L G+LIS P GGT
Sbjct: 145 WSKSFSGIVQSSFLWGYLIS-PIAGGT 170
>At3g46980.1 68416.m05101 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 533
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 452 WTESXSXLTQCTGLQGFLISTPXGGGT 532
W++S S + Q + L G+LIS P GGT
Sbjct: 145 WSKSFSGIVQSSFLWGYLIS-PIAGGT 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,593,810
Number of Sequences: 28952
Number of extensions: 245482
Number of successful extensions: 646
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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