Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120888.seq
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     27   0.17 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.17 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.17 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   6.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -1

Query: 493 KKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 356
           ++TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 203 EETGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -1

Query: 493 KKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 356
           ++TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 203 EETGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -1

Query: 493 KKTGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKV 356
           ++TG   +  +  +VHV+   +  F PG +P+  +T +T   I+++
Sbjct: 203 EETGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYTRHQILEL 248


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 612 KIKYDSELLLHYLYDDQPE 556
           K+K +   +LH+L D++P+
Sbjct: 76  KVKANVRKVLHHLIDNKPD 94


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 580 MKQQFTIVFNFVSALVKFL 636
           M++QFT+ F     L+KF+
Sbjct: 707 MQEQFTLNFRNSDELIKFI 725


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,575
Number of Sequences: 336
Number of extensions: 2478
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)