Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120888.seq
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540...    29   3.1  
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    28   5.4  
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149     27   9.5  

>03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,
            5405710-5405868,5406081-5406252,5406617-5406915,
            5407147-5407392
          Length = 1027

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 623  NAETKLNTIVNCCFIICTMISQNKNSELRQITI 525
            N++  LNT++  CF+ C + ++  + E+ +I +
Sbjct: 929  NSDLVLNTLIFNCFVFCQVFNEVSSREMERINV 961


>12_02_0932 + 24519204-24519380,24520074-24520128,24520251-24522202,
            24522288-24522446,24522878-24523049,24523131-24523429,
            24524037-24524285
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 623  NAETKLNTIVNCCFIICTMISQNKNSELRQITIL 522
            +AE  LNTI+   F+ C + ++  + E+ +I +L
Sbjct: 921  DAEVVLNTIIFNSFVFCQVFNEISSREMEKINVL 954


>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
          Length = 282

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 370 LIIKVLILCDECCKK--ELRDYIKG-ENSFNVAFKNCESILCGASVFK 236
           LIIK  + C++CCKK  ++ + +K  E   N+ ++N  + +  +  FK
Sbjct: 9   LIIKANLECEKCCKKIQKVLNKLKDKEKIINIVYENSNNRVIISGHFK 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,615
Number of Sequences: 37544
Number of extensions: 200713
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)