Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120888.seq
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44046| Best HMM Match : P19Arf_N (HMM E-Value=5.5)                  29   3.2  
SB_57557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      28   7.4  

>SB_44046| Best HMM Match : P19Arf_N (HMM E-Value=5.5)
          Length = 337

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 355 LILCDECCKKELR--DYIKGENSFNVAFKNCESILCG 251
           +I+ DECCK + +    I G  S ++A + C+ + CG
Sbjct: 2   VIIIDECCKVQTKVLRAILGSPSSHLATRPCQVVCCG 38


>SB_57557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 213 NGASHQHRLKTDAPHKMLSQFLKATLNEFSP--LI*SRSSFLQHSSHKINTFIMRP-SVC 383
           N  +H   L   A H M S+++   +  + P   + S S FL+  +HK+N + +R  SVC
Sbjct: 151 NYETHVLLLTYKAIHGMASEYISDLICFYQPERALKSASQFLEQPAHKLNFYGLRAFSVC 210


>SB_26686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 532 IWRNSEFLFWLIIVQIMKQQFTIVFNFVSALVKF 633
           IWRN  ++ W+I V +   QF  +F FV  L+K+
Sbjct: 238 IWRNKAYVTWVITVALF--QFGYLFPFVH-LIKY 268


>SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 382 HTDGLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILC 254
           H  GLI    IL +  CKK L  Y++G+      F +C  +LC
Sbjct: 103 HLYGLIHARYILSERGCKKMLYKYLQGD------FGHCPRVLC 139


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 442 SNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILCDECCKKELRDYI 308
           SNG    + P +    F  +  D L   +L++C  CC   + DY+
Sbjct: 100 SNGLPVFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLVMDYL 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,420
Number of Sequences: 59808
Number of extensions: 275272
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)