Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120888.seq
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47800.1 68418.m05904 phototropic-responsive NPH3 family prot...    28   6.0  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    28   6.0  
At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal...    27   7.9  

>At5g47800.1 68418.m05904 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 559

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 213 NGASHQHRLKTDAPHKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINTFI 365
           + +SH HR  TD    +L  FL     + S  + S ++ L HS  K+   I
Sbjct: 330 HSSSHLHRYDTDLVATVLESFLMLWRRQSSAHLSSNNTQLLHSIRKVAKLI 380


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 457 AQVHVSNGYSFEFHPGSQPRTFQTIHTDG--LIIKVLILCDECCK 329
           A++ +  G +  +  G  P   +T+ +D   LI   LI+CDE CK
Sbjct: 357 AKLFLDEGDTVIYTAGRDPEAQKTVVSDKKPLITAPLIVCDESCK 401


>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catalytic
            subunit, putative (POLD1) similar to DNA polymerase delta
            [Glycine max] GI:2895198, OsPol delta large subunit
            [Oryza sativa (japonica cultivar-group) GI:9188570;
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1081

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 228  QHRLKTDAPHKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINTFIMRPS 377
            Q+ +  D  + + +Q  K  L  F P++ + S  L H SH  +  I  PS
Sbjct: 942  QNNIPIDPNYYLENQISKPLLRIFEPVLKNASKELLHGSHTRSISITTPS 991


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,687,455
Number of Sequences: 28952
Number of extensions: 181918
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)