Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120885.seq
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0T044 Cluster: Putative uncharacterized protein; n=1; ...    37   0.48 
UniRef50_Q8TXZ2 Cluster: Tyrosyl-tRNA synthetase; n=11; Archaea|...    34   2.5  
UniRef50_Q9SEA4 Cluster: Tubulin gamma chain, nucleomorph; n=1; ...    33   4.4  
UniRef50_Q45WA8 Cluster: Rhoptry neck protein 2; n=1; Toxoplasma...    33   7.7  

>UniRef50_A0T044 Cluster: Putative uncharacterized protein; n=1;
           Cotesia plutellae polydnavirus|Rep: Putative
           uncharacterized protein - Cotesia plutellae polydnavirus
          Length = 95

 Score = 36.7 bits (81), Expect = 0.48
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -3

Query: 443 TCYFSLLYKNFRGVQGHPDGTKF 375
           T Y ++  KN RGV+GHPDGTKF
Sbjct: 65  TPYQNIKTKNLRGVKGHPDGTKF 87


>UniRef50_Q8TXZ2 Cluster: Tyrosyl-tRNA synthetase; n=11;
           Archaea|Rep: Tyrosyl-tRNA synthetase - Methanopyrus
           kandleri
          Length = 324

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = +1

Query: 25  NFFLEIYQYE*FILISYYWNEVPXSRVVKXGGLDGKNSYEKLSRHFLDPSF*PINV 192
           N  LEIY+Y  FI   Y  +EV   R  K GG     SYE+L R F+D    P+++
Sbjct: 250 NPILEIYRY--FIFREY--DEVTIERPEKYGGDVTYTSYEELERDFVDGELHPLDL 301


>UniRef50_Q9SEA4 Cluster: Tubulin gamma chain, nucleomorph; n=1;
           Guillardia theta|Rep: Tubulin gamma chain, nucleomorph -
           Guillardia theta (Cryptomonas phi)
          Length = 424

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 308 HDAVIYXXNLKK-NYNSFTN*SKGTSFHPGAPGHL*SFYIIKKSNMF 445
           +D+VI   N+KK NY+S T     TSF+P     + +F ++KK N F
Sbjct: 340 YDSVIINNNVKKENYSSLTYLLNHTSFNPVIKKIIQNFELLKKRNAF 386


>UniRef50_Q45WA8 Cluster: Rhoptry neck protein 2; n=1; Toxoplasma
           gondii|Rep: Rhoptry neck protein 2 - Toxoplasma gondii
          Length = 1381

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 484 FDNLKTTSINFNIKHVTFLYY-IKTSEVSRGTRMERSSFRLISEGIV 347
           FD +  T  N  +    F+Y+ ++  EVSR +  E+ S RL   G+V
Sbjct: 756 FDFITHTQANLEVNQNAFMYHEVRAREVSRQSAAEKGSHRLHERGLV 802


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,624,031
Number of Sequences: 1657284
Number of extensions: 8530936
Number of successful extensions: 13005
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13002
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)