Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120885.seq
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   5.6  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 559 KRYSSILTKTDYLKTQSLAIIGIW*FDNLKTTSINFNIKHVTFLYYI 419
           KRY+  L     ++      + +W  DN K + +    K  T+ Y+I
Sbjct: 548 KRYNETLVMEKKIRDLGFKDVSVWEHDNPKLSDMTLEKKFTTYPYFI 594


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 451  NIKHVTFLYYIKTSEVSRGTRMERSSFRLISEG 353
            N+K +  L  IK  E+ RGTR E S+ R I  G
Sbjct: 1473 NVKQMQELLNIKDMELRRGTRGEASASRWIFSG 1505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,816,716
Number of Sequences: 59808
Number of extensions: 260320
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)