Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120884.seq
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   4.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   8.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   8.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   8.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 162 VAYRLNAITASKINLCAL 109
           +A+ +   TAS +NLCA+
Sbjct: 102 IAFDVMCSTASILNLCAI 119


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 60  DTTGFSHLVXASSSTLQERINLFL 131
           +T  F+  +  SSS LQE+  + L
Sbjct: 391 NTQQFTQYIPESSSNLQEKTKIDL 414


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 98  LDVTRAHKFIFEAVIAFN 151
           LDV + H   F AVI +N
Sbjct: 72  LDVDQWHNKTFLAVIRYN 89


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 35  FMPNSLYE*HNWLQ 76
           F+PN   + H W Q
Sbjct: 120 FVPNHTSDQHEWFQ 133


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 35  FMPNSLYE*HNWLQ 76
           F+PN   + H W Q
Sbjct: 120 FVPNHTSDQHEWFQ 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,936
Number of Sequences: 438
Number of extensions: 752
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)