Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120882.seq
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 32 0.069
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 31 0.16
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.16
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 30 0.28
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 29 0.49
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.5
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 1.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 3.4
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 3.4
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 4.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 6.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 6.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 7.9
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 31.9 bits (69), Expect = 0.069
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 179 SKLSEPTSQSXLPGVMDHLKSACERCEPKYYLEAL 283
+++S SQ+ GV+ L S+CE EPKY + AL
Sbjct: 272 AQMSGNQSQNRKIGVIKRLLSSCEGAEPKYLIRAL 306
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 30.7 bits (66), Expect = 0.16
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 346 NPNKSITSPKLDYRPNEKENKDVLGSAKNNVQV 444
N N ++ + DY+P+EK++K ++G + V++
Sbjct: 740 NENSNVEEAEKDYQPSEKDDKSLIGGILSTVEM 772
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.16
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 350 QTKVSLHLNWIIDLTKKKIKTFSAQRKTMYKSKAKINSEDVKKKVS 487
+T ++ HL+W + +KI+ ++ KT+ K K++S D+ K S
Sbjct: 5 KTNLNRHLDWFFRESPQKIENVTSPIKTLDFVKVKVSSSDIVVKDS 50
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 29.9 bits (64), Expect = 0.28
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 75 APTCCSHIFCFSCSNASTS 19
A T C HIFC+SC N TS
Sbjct: 267 AATECGHIFCWSCINGWTS 285
>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 278
Score = 29.1 bits (62), Expect = 0.49
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = +2
Query: 341 RLIQTKVSLHLNWIIDLTKKKIKTFSAQRKTMYKSKAKINSE 466
RL+Q+ ++ H++ ++DL K+ + TF+ + ++ N+E
Sbjct: 107 RLLQSCITKHVDRLLDLCKRNLSTFTIDISSSWRQNIIENNE 148
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 17 AEVDALLHEKQNIWEQQVGAAAHFDR--ELIESYEERITQLEALCERQRRELARWFSKLS 190
A+ + L+EK ++EQ+ + +++E+ I +LE E Q+R A W SK S
Sbjct: 237 AQQNTELNEKIQLFEQKRSNYSSDGNISKILETDPTSIKELEEEVETQKRLTALWESKSS 296
Query: 191 EPTSQ 205
E S+
Sbjct: 297 ELQSE 301
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 17 AEVDALLHEKQNIWEQQVGAAAHFDRELIESYEERITQLEALCERQRRELA 169
A+++ + KQ + + ++ + DR YEE IT L+A E +R+E+A
Sbjct: 62 AQINEMALMKQTVMDLEMQQSKVKDR-----YEEEITSLKAQLEARRKEIA 107
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 351 WISR*MSYXPTQFPDLSSTR 292
WI + +S+ PT FP L++ R
Sbjct: 2465 WIKQLLSFQPTNFPSLTACR 2484
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 340 SANPNKSITSPKLDYRPNEKENKDVLGSAKNNVQVKSQN 456
+ NP +S P L+ + EKE KDV ++ N + S +
Sbjct: 93 TGNPQESKQEPNLEVQQTEKE-KDVDSASAENESINSSS 130
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 144 ASVRGVNLPVGLASYLNRLLKVGFLVSWTI 233
A G+N P +++YL+ +L GFL+ W I
Sbjct: 17 AQALGINQPF-VSAYLSFVLANGFLLKWLI 45
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 4.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 81 AAAPTCCSHIFCFSC 37
AA + C H++CFSC
Sbjct: 224 AARMSRCGHVYCFSC 238
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 268 LSRGAAQLASAAQVRELRRXIAHLSANPNKSITSPKLDYR 387
L R AQL+ + R ++HL NP K IT PKL+ +
Sbjct: 213 LERSIAQLS-----KNTMRAVSHLE-NPPKDITLPKLNVK 246
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 8 NKQAEVDALLHEKQNIWEQQVGAAAHFDRELIESYEERITQL 133
+KQ + +EK + W+ + A H +RE S+E I +L
Sbjct: 1287 HKQFSLKETWYEKLHRWDDALAAYEHREREGDSSFEINIGKL 1328
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 265 VLSRGAAQLASAAQVRELRRXIAHLSANPNKSITSPKLDYRPNEKENKDVLGSAKNNVQV 444
VL G LA+ A + + +H+ P+KS+ + L + E D+L +N +
Sbjct: 840 VLGSGRT-LANLAPMMLITHNASHVPPRPSKSLWNWLLGEQSTSAEELDILLGGENRAES 898
Query: 445 K 447
K
Sbjct: 899 K 899
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,259
Number of Sequences: 5004
Number of extensions: 33244
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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