Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120882.seq
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0962 - 9579051-9579707,9579804-9580706                           28   4.6  
03_02_0715 + 10621789-10623243,10624074-10625018                       28   4.6  
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   6.1  

>12_01_0962 - 9579051-9579707,9579804-9580706
          Length = 519

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 259 AEVLSRGAAQLASAAQVRELRRXIAHLSAN 348
           +E+LS        A +V+ELRR +AHL+ N
Sbjct: 136 SELLSARRVATYGAVRVKELRRLLAHLTKN 165


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 66  CCSHIFCFSC 37
           CCSH FCF+C
Sbjct: 431 CCSHYFCFAC 440


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 185 LSEPTSQSXLPGVMDHLKSAC-ERC 256
           LS+      LPGV DHLK  C E+C
Sbjct: 434 LSKGCLSMQLPGVFDHLKKICIEKC 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,080
Number of Sequences: 37544
Number of extensions: 201828
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)