Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120882.seq
         (576 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    27   0.44 
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   3.1  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 0.44
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 20  EVDALLHEKQNIWEQQVGAAAHFDREL--IESYEERITQLEALCERQRRELARWFSKLSE 193
           E++A+L  K+ +   +    A   R    I S EE+  +LE    +Q+REL    +K  E
Sbjct: 267 EMEAILARKKELETSKAKQVAIGQRSTDEINSLEEKTERLEDTISKQKRELMDALAKADE 326


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +2

Query: 47  QNIWEQQVGAAAHFDRELIESYEERITQLEALCERQRRELARWFSKLSEPTSQSXLPGVM 226
           QNI +++       D+  +E  +    +L+A  E +RREL +    L +       P V+
Sbjct: 128 QNIRDKKEAERLRRDKAKVEEDQRHYRELKAADEIKRRELIQKAEDLIQKDKVG--PRVL 185

Query: 227 DHLKSACE 250
           +     CE
Sbjct: 186 ESAAKFCE 193


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,826
Number of Sequences: 2352
Number of extensions: 8607
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54665910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)