Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120882.seq
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    32   0.34 
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    30   1.0  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        30   1.0  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    30   1.4  
U70853-9|AAB09142.2|  158|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    27   7.2  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    27   7.2  
Z75710-5|CAB54207.1|  240|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    27   9.5  

>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 41  EKQNIW-EQQVGAAAHFDRELIESYEERITQLEALCERQRRELARWFSKLSE 193
           +++N W    +   +   RE + + ++ I +L +LCE QR E   W S L +
Sbjct: 466 QRKNTWLTASIRRLSEQRREELAAKKDEILKLNSLCELQRMEKVEWLSDLKK 517


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 332 LIYRLIQTKVSLHLNWIIDLTKKKIKTFSAQRKTMYKSKAKINSEDVKKKVSF 490
           LI ++  T  +    W ID  K+K   F  + KT       +N  D+ K++S+
Sbjct: 147 LITKICSTIYNKEEGWRIDAIKRKGVIFLCEEKTEQAKNRDLNQTDLDKRMSY 199


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 332 LIYRLIQTKVSLHLNWIIDLTKKKIKTFSAQRKTMYKSKAKINSEDVKKKVSF 490
           LI ++  T  +    W ID  K+K   F  + KT       +N  D+ K++S+
Sbjct: 147 LITKICSTIYNKEEGWRIDAIKRKGVIFLCEEKTEQAKNRDLNQTDLDKRMSY 199


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +2

Query: 2   LANKQAEVDALLHEKQNIWEQQVGAAAHFDR--ELIESYEERITQLE---ALCERQRREL 166
           LA   A+++ L  +   +   Q GA A  DR  ELI  ++E I QLE    + E  +R+L
Sbjct: 316 LAALNAQIEELTQKALKVDSMQQGATASEDRIRELIGGHQEAIKQLENTKQMNESLQRDL 375

Query: 167 ARWFSKLSE 193
               ++ SE
Sbjct: 376 VEKEARFSE 384


>U70853-9|AAB09142.2|  158|Caenorhabditis elegans Hypothetical
           protein M01H9.1 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 218 GVMDHLKSACERCEPKYYLEALXSWRVLLKSGNCV 322
           GV+       E+C  KY ++AL S RV+ + GNC+
Sbjct: 89  GVVPLRDPIIEKCLEKYDVKALPSCRVVDEFGNCI 123


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
          protein K02B12.8 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 63 CSHIFCFSCSNASTSACLL 7
          C HIFC  C+ A  + CL+
Sbjct: 23 CFHIFCTKCAKADLAVCLI 41


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 95   ELIESYEERITQLEALCERQRRELARWFSKLSEPTSQSXLPGVMDHLKSACERCE 259
            +LIE  E  I QLE   E +R+ +A+    LS   S++ L  +++  K   E+ E
Sbjct: 1199 DLIEHPENDIAQLEVDLEEKRKLIAKIEIILSLSESRAMLFDLLNEQKKIAEKME 1253


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 197 TSQSXLPGVMDHLKSACERCEPKYYLEA 280
           ++ S +P +MDHL+  CE   P Y  EA
Sbjct: 596 SNSSSIPDIMDHLRLLCE-VAPMYISEA 622


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 197 TSQSXLPGVMDHLKSACERCEPKYYLEA 280
           ++ S +P +MDHL+  CE   P Y  EA
Sbjct: 596 SNSSSIPDIMDHLRLLCE-VAPMYISEA 622


>Z75710-5|CAB54207.1|  240|Caenorhabditis elegans Hypothetical
          protein D1081.9 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 69 TCCSHIFCFSCSNAS-TSACLL 7
          T C H+FC +C+ A+  S C L
Sbjct: 21 TACGHVFCQNCTKAAFNSQCYL 42


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 92  RELIESYEERITQLEALCERQRRELARWF 178
           ++L+E  +E   +LE + E QR+E  R F
Sbjct: 54  KKLVEEKDEETARLEEMLEEQRKESDRMF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,168
Number of Sequences: 27780
Number of extensions: 186492
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)