Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120882.seq
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.13 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.0  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   5.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 301 AQVRELRRXIAHLSANPNKSITSPKLDYRPNEKENKDVLGSAKNNVQ 441
           A V+EL R    ++ N N +I +       N+K NK    + KNN Q
Sbjct: 403 ANVKELIRNTHCVNNNQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQ 449


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 182 KLSEPTSQSXLPGVMDHLKSACERCEPKYYLEALXSWRVLLKSG 313
           +L E  S    P V D L S     +PK  ++    W+ +L+SG
Sbjct: 413 ELGELASSFVGPKVKDCLISWNPLMQPKQPIKLFEQWKSILESG 456


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 335 IYRLIQTKVSLHLNWIIDLTK 397
           I  L  TK+ L  +W+ +LTK
Sbjct: 219 ILHLRHTKIWLRPDWLFNLTK 239


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 444 QKPKSIQRMLKRKFLLISVMSNVXLG 521
           +KPK I   ++R+F    +M N+  G
Sbjct: 35  RKPKGIDNRVRRRFKGQYLMPNIGYG 60


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 414 NVFIFFFVRSIIQFR 370
           N FIF +  S+++FR
Sbjct: 20  NYFIFLYFNSLVRFR 34


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 30 HYCMRSKIYGSNRSVLLPILIE 95
          HYC+R   Y SN + +   L++
Sbjct: 10 HYCLRWNNYQSNMTSVFHQLLQ 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,342
Number of Sequences: 438
Number of extensions: 2325
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)