Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120881.seq
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24729 Cluster: GP16 protein; n=12; Nucleopolyhedroviru...   125   8e-28
UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...    80   4e-14
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    62   8e-09
UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: G...    56   1e-06
UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep: ...    51   2e-05
UniRef50_A5UN47 Cluster: Helicase, UvrD/REP family; n=1; Methano...    37   0.47 
UniRef50_Q8HCR0 Cluster: Orf258 protein; n=2; Oryza sativa (japo...    36   1.1  
UniRef50_A1YJ03 Cluster: Gp16; n=5; Nucleopolyhedrovirus|Rep: Gp...    34   3.3  
UniRef50_Q5CX25 Cluster: Putative uncharacterized protein; n=4; ...    33   5.8  
UniRef50_Q9W750 Cluster: Cystic fibrosis transmembrane conductan...    33   7.7  
UniRef50_A6Q3V6 Cluster: Lipoprotein thiredoxin; n=1; Nitratirup...    33   7.7  
UniRef50_Q7XPG9 Cluster: OSJNBb0003B01.14 protein; n=20; Oryza s...    33   7.7  

>UniRef50_P24729 Cluster: GP16 protein; n=12;
           Nucleopolyhedrovirus|Rep: GP16 protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 106

 Score =  125 bits (302), Expect = 8e-28
 Identities = 62/76 (81%), Positives = 64/76 (84%)
 Frame = +2

Query: 83  NNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKK 262
           NNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKN KK
Sbjct: 22  NNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKK 81

Query: 263 YPISTKKLTCY*QKTG 310
                +K+     K G
Sbjct: 82  ISNLDEKINVLLTKNG 97



 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 19 MNFWATFSICLVGYLVYAGHL 81
          MNFWATFSICLVGYLVYAGHL
Sbjct: 1  MNFWATFSICLVGYLVYAGHL 21


>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score = 80.2 bits (189), Expect = 4e-14
 Identities = 39/53 (73%), Positives = 39/53 (73%)
 Frame = +2

Query: 401 MKPTNNVMFDDASVLWIDTXYIYXNLXMPLQAFQQLCSPSHLNIEK*FNDAGG 559
           MKPTNNVMFDDASVLWIDT YIY NL MPLQAFQQL         K  NDAGG
Sbjct: 1   MKPTNNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGG 53



 Score = 34.3 bits (75), Expect = 2.5
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 561 SCHNTVKYMVGHFGASVL 614
           SCHNTVKYMV  +GA+VL
Sbjct: 54  SCHNTVKYMVDIYGAAVL 71


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 62.5 bits (145), Expect = 8e-09
 Identities = 30/52 (57%), Positives = 31/52 (59%)
 Frame = +2

Query: 401 MKPTNNVMFDDASVLWIDTXYIYXNLXMPLQAFQQLCSPSHLNIEK*FNDAG 556
           M P NNVMFDDASV+WID  YIY N  MPL  FQQL         K  ND G
Sbjct: 1   MTPNNNVMFDDASVMWIDADYIYQNSKMPLSTFQQLLFSIPSKHRKMINDIG 52


>UniRef50_A0EZ02 Cluster: Gp16; n=1; Ecotropis obliqua NPV|Rep: Gp16
           - Ecotropis obliqua NPV
          Length = 98

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 26/76 (34%), Positives = 46/76 (60%)
 Frame = +2

Query: 59  IWCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 238
           +W T  + ++E++ +K +LVVMY+ +E  FSN+ +EI  LK  TF +   LQN+T  +  
Sbjct: 15  MWQT-GSLSHEIRAVKHLLVVMYDMIESKFSNLHNEISFLKNGTFRLFEQLQNSTKHSIK 73

Query: 239 AVVKNAKKYPISTKKL 286
            ++ N+ K  +   K+
Sbjct: 74  LIMNNSNKIDVLNNKI 89


>UniRef50_Q461U1 Cluster: Orf125; n=2; Nucleopolyhedrovirus|Rep:
           Orf125 - Trichoplusia ni SNPV
          Length = 95

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 24/76 (31%), Positives = 43/76 (56%)
 Frame = +2

Query: 59  IWCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 238
           +W T  + ++EL  IK +L  +YE+++  F  +V ++   + DT   L+ +QN T  T+D
Sbjct: 15  LWHT-GSISHELAAIKKLLTFIYEAIQDRFDAIVYDMAKFRNDTMFYLNRIQNTTKITYD 73

Query: 239 AVVKNAKKYPISTKKL 286
            VV N  K  +  +K+
Sbjct: 74  LVVTNGNKIDVINQKI 89


>UniRef50_A5UN47 Cluster: Helicase, UvrD/REP family; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Helicase,
           UvrD/REP family - Methanobrevibacter smithii (strain PS
           / ATCC 35061 / DSM 861)
          Length = 661

 Score = 36.7 bits (81), Expect = 0.47
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +2

Query: 167 IDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKYPISTKKLTCY*QKTG 310
           +  LKTD  + L NL++N + T   + KN ++Y I T KL C   KTG
Sbjct: 481 VQELKTDANVELLNLEHNRLETLKNIEKNGERYVIPT-KLKCPVCKTG 527


>UniRef50_Q8HCR0 Cluster: Orf258 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: Orf258 protein - Oryza
           sativa subsp. japonica (Rice)
          Length = 258

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = +1

Query: 484 AFASVSTTLFTIPSKHRKMIQRCGRIRVITRSNTWWDISERPFWILR 624
           A+A   T +FT+ S +R++IQRCG     T S+T  + + +  W LR
Sbjct: 58  AWAWDRTGIFTVRSAYRELIQRCGLSEPATGSSTGDEATWKALWRLR 104


>UniRef50_A1YJ03 Cluster: Gp16; n=5; Nucleopolyhedrovirus|Rep: Gp16
           - Spodoptera frugiperda nuclear polyhedrosis virus
           (SfNPV)
          Length = 97

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = +2

Query: 41  AFVWWVIWCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN 220
           A++W+      ++  NE+  +K  L+++YE+    F +V   +          L  L N 
Sbjct: 14  AYLWYA-----NSMANEINLVKKFLLLIYETTTTKFDDVTKLMSDYHETIVQNLEKLHNM 68

Query: 221 TIRTWDAVVKNAKKYPISTKKL 286
           T  + D +V N++K  +   K+
Sbjct: 69  TKHSIDLIVINSRKIDVINGKI 90


>UniRef50_Q5CX25 Cluster: Putative uncharacterized protein; n=4;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 882

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = -3

Query: 234 HVRIVLFCKLLNIINVSVLRESISSTTLEK-CFSIDSYMTTS---IDFISCSSLLQVSRV 67
           HV +   CK +++I  ++L E+I  ++ E  CF IDS +  +   I FI C  L  ++ +
Sbjct: 578 HV-VFSLCKFVSVIINAILSENIQDSSFEDLCFLIDSLLNMNRGFIPFILCGDLSPINNI 636

Query: 66  HQIT 55
              T
Sbjct: 637 DPST 640


>UniRef50_Q9W750 Cluster: Cystic fibrosis transmembrane conductance
           regulator I; n=7; Euteleostei|Rep: Cystic fibrosis
           transmembrane conductance regulator I - Salmo salar
           (Atlantic salmon)
          Length = 1519

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 134 MEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKYPISTKKLT-CY 295
           + K F   +D  D  K  +F +  NL     R WD  V +AKK P   + L+ C+
Sbjct: 24  LRKGFRKKLDLTDVYKAPSFDLADNLSERLEREWDREVASAKKKPRLLRALSRCF 78


>UniRef50_A6Q3V6 Cluster: Lipoprotein thiredoxin; n=1; Nitratiruptor
           sp. SB155-2|Rep: Lipoprotein thiredoxin - Nitratiruptor
           sp. (strain SB155-2)
          Length = 186

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +2

Query: 44  FVWWVIWCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNT 223
           F+++  WC   +C  E+ E+  +    Y++ +     V   +D    DTF+   N++   
Sbjct: 73  FIFFATWCP--SCKAEIPELNEL----YKTFKTRIDIVALPLDGKNLDTFIQTYNMKYFV 126

Query: 224 IRTWDAVVKNAKK 262
            RT D  ++ AKK
Sbjct: 127 SRTIDKNLQFAKK 139


>UniRef50_Q7XPG9 Cluster: OSJNBb0003B01.14 protein; n=20; Oryza
           sativa|Rep: OSJNBb0003B01.14 protein - Oryza sativa
           (Rice)
          Length = 1728

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 195 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 91
           I +++L   +S     +CF    YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,064,694
Number of Sequences: 1657284
Number of extensions: 10285533
Number of successful extensions: 27210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27199
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)