Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120881.seq
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    24   1.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   1.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   1.6  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   3.8  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   5.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.6  

>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 83  NNELQEIKSILVVMYESMEKHFSNVVDEIDSLK 181
           NN+    + + +V +++ E  F  ++ E+DS++
Sbjct: 44  NNQPVHDEHLFIVTHQAYELWFKQIIYELDSIR 76


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 83  NNELQEIKSILVVMYESMEKHFSNVVDEIDSLK 181
           NN+    + + +V +++ E  F  ++ E+DS++
Sbjct: 44  NNQPVHDEHLFIVTHQAYELWFKQIIYELDSIR 76


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +2

Query: 83  NNELQEIKSILVVMYESMEKHFSNVVDEIDSLK 181
           NN+    + + +V +++ E  F  ++ E+DS++
Sbjct: 44  NNQPVHDEHLFIVTHQAYELWFKQIIYELDSIR 76


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 577 SNTWWDISERPFWI 618
           SN WWD+     W+
Sbjct: 186 SNAWWDVHSTGSWL 199


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  VIWCTRDTCNNELQEIKSILVVMYESMEKHF 148
           ++W T +TC   +  + + LV++ +     F
Sbjct: 341 IVWITSETCEEIVAGVTTYLVILIQFNNSDF 371


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 195 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLLQV-SRVHQITHQTN 43
           I+ SV  ES  +     CFS +S + TS       S LQ+  ++  +   TN
Sbjct: 93  IHCSVKSESSQAAKYGGCFSGESTVLTSTGLRRNLSSLQIGEKIQALDPSTN 144


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 508 LFTIPSKHRKMIQRCGRIRVITRSNTWWDISE 603
           L TI SK+R+M +     +VIT    ++ +S+
Sbjct: 150 LDTIKSKYRQMHRLLANYKVITSDEFFYLVSK 181


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 268 WIFFCIFYNCVPRSNRVILQVAQH 197
           W+F C F   +     ++LQV  H
Sbjct: 667 WLFHCHFLFHIVIGMNLVLQVGTH 690


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,179
Number of Sequences: 336
Number of extensions: 3020
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)