Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120881.seq
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 1.7
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 2.3
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.3
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 2.3
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 27 2.3
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 4.0
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 5.3
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 7.0
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 25 7.0
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 7.0
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 7.0
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 7.0
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.2
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 9.2
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 74 DTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTI 226
+T NNE E K V++ +S++ V +DS T+T + + +Q TI
Sbjct: 36 ETANNE--EEKDANVILNKSVKMEVEEVNGHVDSSSTETDIEMQVIQQPTI 84
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 365 YINLVISSVY*TLSRLLTTPFFVNST 288
YIN V + TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -3
Query: 318 VNYPVFC**HVNFFVEIGYFFAFFTTASHVRIVLFCKLLNIINVSVLR-ESISSTTLEKC 142
V + V+C + F+ + YF+ + A V ++ + + + V + + ++S +L KC
Sbjct: 138 VYFAVWCASCLMIFISLWYFYETWIKAVKVTVIFLAQCIKVTVVFLAQCVKVTSISLAKC 197
Query: 141 FSIDSYMTTSIDFISCSSLLQVSRVHQI 58
+ + ++ L Q +V I
Sbjct: 198 VKLTAVFLAQCVKVTAVFLAQCVKVISI 225
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -2
Query: 247 YNCVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 116
Y V R+ R++ V H N +YH GK++F HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 152 NVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKYPISTKKLT 289
N+V + + + +M S +NT R WD + Y IS + T
Sbjct: 356 NLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYTISRAEKT 401
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 125 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKYPISTKKL 286
Y + +++ +++D +S D S+ NN++ TW+ V+ K P KL
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWN-VIYTLDKSPERLLKL 342
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 291 HVNFFVEIGYFFAFFTTASHVRIVLF 214
HV+ FV G +A F+T +V+I+ F
Sbjct: 160 HVSSFVPFGDRYAIFSTPHNVKILAF 185
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 365 YINLVISSVY*TLSRL-LTTPFFVNSTLIFSSRLDIFLH 252
Y+NL+ S + + L +T+ FF N+++ S+ + LH
Sbjct: 298 YLNLLCDSFHNFMDGLAITSAFFTNTSIGISTTFAVLLH 336
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN-TIRTW 235
N L E K L+ + K NVV I ++ D+ + + NN IR W
Sbjct: 81 NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 182 TDTFMMLSNLQNNTIRTWDAVVKNAK 259
TD+ +++S+ Q+ T++ WD K K
Sbjct: 441 TDSRLLVSSSQDTTLKVWDVRSKKMK 466
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 111 IDFISCSSLLQVSRVHQITHQTNAKRGPKVHCRNLVP 1
IDF L Q SR + +AK+ + H R+ VP
Sbjct: 222 IDFSETRPLAQASRATPDIKEQHAKKPKRKHTRSTVP 258
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 227 ESCYFASCSTS*TCPF*ENQFRLPHWKNVFP*IR-T*PLVLILFLVARYCKCPAYTK 60
E C A+C+TS + + + Q +PH +N F + T + L + YC P+ T+
Sbjct: 48 ELCQTAACATSCSDWYPQQQTHMPH-QNAFDSAKATAKMALPPTAFSNYCVKPSLTR 103
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 53 WVIWCTRDTCNNELQEIKSILVVMYESMEKHFSN 154
WVI C D + EI L Y+ +E+H +N
Sbjct: 659 WVIRCWVDEYMTWVAEIGGYLDDSYDELEQHHAN 692
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 244 NCVPRSNRVILQVAQHHKRVRFKRI 170
+ VPR RVI QV+Q R R K+I
Sbjct: 8 DAVPRKRRVISQVSQACIRCRQKKI 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,956
Number of Sequences: 5004
Number of extensions: 48013
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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