Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120881.seq
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         29   3.2  
SB_43785| Best HMM Match : WAP (HMM E-Value=2e-05)                     29   4.2  
SB_35409| Best HMM Match : Guanylate_cyc (HMM E-Value=1.7e-17)         29   4.2  
SB_52625| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)                        28   7.4  
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)                  28   7.4  
SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)                      28   7.4  
SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)                   28   7.4  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  28   7.4  
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 207 LLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLLQVSRVHQI-THQTNAKR 34
           ++  +NV +   +IS++TL   F        +++ ++C+S L VS V  I  + T AKR
Sbjct: 589 VIRSLNVHIACHAISTSTLSNFFQSVQQPPGNVNLLNCASELPVSPVINIRVNATVAKR 647


>SB_43785| Best HMM Match : WAP (HMM E-Value=2e-05)
          Length = 103

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 113 VLILFLVARYCKCPAY 66
           VL LF +ARY KCPAY
Sbjct: 14  VLFLFHLARYGKCPAY 29


>SB_35409| Best HMM Match : Guanylate_cyc (HMM E-Value=1.7e-17)
          Length = 577

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +2

Query: 86  NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKY 265
           ++L+  KS++  +++ +  +FS+VV  +D     T M +  L N+     D ++ N   Y
Sbjct: 422 DQLKRGKSVVPELFDEVTIYFSDVVAFMDLASDSTPMEIVTLLNDLYIALDKILANHDVY 481

Query: 266 PIST 277
            + +
Sbjct: 482 KVES 485


>SB_52625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 25  FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 82

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 83  ENNSKVTWVHKLKN 96


>SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 211

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 25  FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 82

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 83  ENNSKVTWVHKLKN 96


>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
          Length = 478

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 25  FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 82

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 83  ENNSKVTWVHKLKN 96


>SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 104 FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 161

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 162 ENNSKVTWVHKLKN 175


>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 314 FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 371

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 372 ENNSKVTWVHKLKN 385


>SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 104 FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 161

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 162 ENNSKVTWVHKLKN 175


>SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)
          Length = 217

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 51  FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 108

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 109 ENNSKVTWVHKLKN 122


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 44  FVWWVI----WCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNL 211
           F+ W++    +C+ + C +E+      L     ++ K++  +++  D  K      L +L
Sbjct: 251 FIRWLLGVNRYCSSNACRSEVGRFPMRLKAKCRAI-KYWQKMINS-DHSKLAVLAFLDSL 308

Query: 212 QNNTIRTWDAVVKN 253
           +NN+  TW   +KN
Sbjct: 309 ENNSKVTWVHKLKN 322


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 101 IKSILVVMYESMEKHFSN----VVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKYP 268
           +K I V MY  ++K  +       DE+++   D  + L + QNNT    + +VK  +K  
Sbjct: 518 VKPIKVSMYYDVKKLVNANRRVASDEVEAGDIDPVLYLWDKQNNTCFNGEVLVKQKEKVT 577

Query: 269 ISTKK 283
           +  K+
Sbjct: 578 LPIKR 582


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,594
Number of Sequences: 59808
Number of extensions: 338636
Number of successful extensions: 865
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)