Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120881.seq
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF025471-6|AAB71065.1|  243|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z73898-6|CAA98067.2|  168|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical ...    29   3.7  
U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclas...    28   4.9  
Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 243 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 94
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>AF025471-6|AAB71065.1|  243|Caenorhabditis elegans Hypothetical
           protein R52.8 protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 44  FVWWVIWCTRDTCNNELQEIK---SILVVMYESMEKHFS-NVVDEIDSLKTDTFMMLSNL 211
           F+  V+ C ++ C +    I+    + +V        FS NV+DE     T TF+   NL
Sbjct: 145 FIGLVLRCEKEQCESRNWSIEIAFQLKIVSPNGRSAVFSGNVIDEPICHGTTTFITWDNL 204

Query: 212 QNNTI 226
           +NN I
Sbjct: 205 ENNYI 209


>Z73898-6|CAA98067.2|  168|Caenorhabditis elegans Hypothetical
           protein ZK822.2 protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/71 (19%), Positives = 32/71 (45%)
 Frame = +2

Query: 56  VIWCTRDTCNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTW 235
           V W   +  + +  E    + +  E + K+ S V+D + + K +   + ++L    I+  
Sbjct: 64  VKWAEDNNLSEQYAEFSKNMTIHKEEVSKNISGVIDRLAAAKVEVDKVNADLSLTKIQRD 123

Query: 236 DAVVKNAKKYP 268
           + + +  K YP
Sbjct: 124 EKIDELKKTYP 134


>AF016450-8|AAB65993.1|  578|Caenorhabditis elegans Hypothetical
           protein B0238.7 protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 188 TFMMLSNLQNNTIRTWDAVVKNAKKY 265
           T  M  N QN  +R +D + KN+KKY
Sbjct: 534 TCEMSDNFQNGRLRIYDDINKNSKKY 559


>U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclase
           protein 11 protein.
          Length = 1032

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +2

Query: 86  NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNAKKY 265
           N L+  + +    Y+S+  +FS++V         T + + N+ NN    +D ++     Y
Sbjct: 806 NSLKNGQPVDAEFYDSVSIYFSDIVGFTALSSKSTPLQVVNMLNNLYTNFDTIIDKFDCY 865

Query: 266 PIST 277
            + T
Sbjct: 866 KVET 869


>Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical
           protein F59A1.13 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 279 FVEIGYFFAFFTTASHVRIVLFCKLLNIINVSVL 178
           F  +G  F  F+  S++  V+FC++L  + VSV+
Sbjct: 74  FSALGTLFFPFSVDSNIYAVIFCRVLQGLGVSVI 107


>Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical
           protein F53H4.5 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 469 SXFXNAFASVSTTLFTIPSKHRKM 540
           S   +AF + ST+LFT+P K  +M
Sbjct: 108 SHIPSAFPNASTSLFTVPKKETQM 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,980
Number of Sequences: 27780
Number of extensions: 273607
Number of successful extensions: 849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)