Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120881.seq
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   5.8  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   5.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.6  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 194 MMLSNLQNNTIRTWDAVVKNAK 259
           M+ +    N +  WD  VKNA+
Sbjct: 76  MIATKAMKNDVILWDFFVKNAR 97


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 194 MMLSNLQNNTIRTWDAVVKNAK 259
           M+ +    N +  WD  VKNA+
Sbjct: 50  MIATKAMKNDVILWDFFVKNAR 71


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 570 NTVKYMVGHFGASVLDFANA 629
           NT+ YM  H G +++ + NA
Sbjct: 198 NTLVYMADHKGDALIVYQNA 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,802
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)