Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120881.seq
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    31   0.85 
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    28   6.0  

>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 107 SILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDA 241
           +IL ++ E  +KH  + VD+ D     T   ++    N +RTWDA
Sbjct: 50  NILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDA 94


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 201 NIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLLQVSRVHQITHQTNAKRGPKV 22
           N+IN+  L  S  S+ +E   SI +     +D   CSSL+++     I +  N K+    
Sbjct: 377 NLINLKTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELP--SSIGNLINLKKLDLS 434

Query: 21  HCRNLV 4
            C +LV
Sbjct: 435 GCSSLV 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,212
Number of Sequences: 28952
Number of extensions: 238887
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)