Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120880.seq
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-14|CAB63386.1|  257|Caenorhabditis elegans Hypothetical...    28   5.0  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AL132952-14|CAB63386.1|  257|Caenorhabditis elegans Hypothetical
           protein Y51H4A.23 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 110 NLICDKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSILNAQ 247
           NL  DK + +     MC PF+K   ++ I +R    E+ LS +  Q
Sbjct: 69  NLNSDKKWYITYFEFMCNPFIKYMDESLISIRDVATEKFLSTMRDQ 114


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/73 (20%), Positives = 33/73 (45%)
 Frame = +2

Query: 35  PITKTKVTVINENNLITQIFVQFFYNLICDKAYSLYTKRDMCVPFVKECKKATIGLRQED 214
           P     + +IN  NL   ++ +  YNL+C    S+Y K+D  +   K  +   +  +  +
Sbjct: 353 PTLLCAIPLINGINLQRTVYSKIIYNLLC----SIYHKKDKYLKETKNLELKNLNSKNFE 408

Query: 215 HERVLSILNAQCN 253
           + ++      +C+
Sbjct: 409 NSKIKKNSELRCS 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,928
Number of Sequences: 27780
Number of extensions: 333194
Number of successful extensions: 924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)