Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120880.seq
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43020.1 68415.m05339 amine oxidase family protein similar to...    28   4.7  
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa...    28   6.2  

>At2g43020.1 68415.m05339 amine oxidase family protein similar to
           polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
           profile PF01593 amine oxidase, flavin-containing
          Length = 490

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 381 FETLFREFAQQSVSGSGVGTPQRLSFHHEQVFGRK 485
           FE    E+ Q++++  GVG   ++  H E+VF  K
Sbjct: 287 FEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPK 321


>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile:  PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 232 TQHALVILLAQSDGCFFAFFDKWHAHVAFC-VQRIRFVANQVIEKLHKY--LCNQIVFVN 62
           T+  L+ LLA+SDGC       W  +   C V   R      I   H Y  +C++ +++N
Sbjct: 129 TKVPLMRLLAESDGCDST--TTWLGNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMN 186

Query: 61  NGHFRFCNRS 32
            G    CNRS
Sbjct: 187 RGTCPLCNRS 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,509
Number of Sequences: 28952
Number of extensions: 288035
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)