Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120878.seq
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612...    28   5.5  

>09_02_0235 +
           6122145-6122206,6122408-6122417,6123515-6123549,
           6124422-6124842,6124978-6125412
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 529 FVRVCRATNCVFST*PTPERIEVVLGDSII*QLQ 630
           FV V ++TNC+    P PE I+ VL  S+   L+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAISLFKPLE 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,290,436
Number of Sequences: 37544
Number of extensions: 337194
Number of successful extensions: 774
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)