Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120878.seq
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)           31   0.80 
SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)                29   3.2  
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_12532| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-09)                 27   9.8  

>SB_51040| Best HMM Match : Kinesin (HMM E-Value=5.89947e-43)
          Length = 197

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 219 AHFRRRRQSIQNTIAR-HLVGNKERGIKRILIPSATNYQEVFN-LNSMMQAEQLIFHLIY 392
           AHF   R S+   + + +L GN +  +   + PSA NY+E  + L    +A++++ H + 
Sbjct: 131 AHFVPYRDSVLTWLLKDNLGGNSKTVMVATISPSADNYEETLSTLRYADRAKKIVNHAVV 190

Query: 393 NNE 401
           N +
Sbjct: 191 NED 193


>SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)
          Length = 294

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 436 IPKFSQAARKRVIHSVYATTRSILAPQTRTRFVRVCRATNCVFS 567
           +PK SQ +R  ++HS+    R  + P  RT   R CR +  VF+
Sbjct: 135 MPKVSQDSRSDILHSLPVYFR--VKPSLRTPSGRKCRKSRTVFT 176


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 142 DAYHD-DGWFICNSHLIKRFKMSKMVL-PIFDEDDNQFKIRSLGI*LEIKKE 291
           DA  D  GW++    L+K+F+ S+M    +  +DD     + + + L++ KE
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKE 237


>SB_12532| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-09)
          Length = 297

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 444 VFTSGTQTRYTQRLRNYKKHSSTTNPNTFCSRVSRDELR 560
           +   GT   YT    ++K+H+        CSRVSR +++
Sbjct: 165 ILLMGTAAAYTITFVSFKRHTIKMEQAGSCSRVSRRQMQ 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,414,311
Number of Sequences: 59808
Number of extensions: 407829
Number of successful extensions: 1072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)