Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120878.seq
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    36   0.025
Z72517-3|CAA96695.1|  717|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 354 MMQAEQLIFHLIYNNEEAVNVICDNLKYTEVFTSGTQTRYTQRLRNYKKHSSTTNPNTFC 533
           M +  +L  H  Y+  + V +   NL Y+   TS ++      L ++   SST + NTF 
Sbjct: 222 MFEQAKLGRHKSYSGSQCVKLYIPNLSYSNS-TSSSRASSVDSLASFNSQSSTDSQNTFR 280

Query: 534 SRVSRDELRF 563
               RD+L +
Sbjct: 281 KNGGRDQLEW 290


>Z72517-3|CAA96695.1|  717|Caenorhabditis elegans Hypothetical
           protein T28F4.4 protein.
          Length = 717

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 363 AEQLIFHLIYNNEEAVNV-----ICDNLKYTEVFTSGTQTRYTQRLRNYKKHSSTTNPNT 527
           ++Q + H +  N++ + V     IC+N  Y E   S      T+ +R ++ HS +  P  
Sbjct: 537 SDQEMLHFMDENDKEIAVAPMKNICENSHYFEGMYSSDFVEKTEGIRTFQVHSESCLPEE 596

Query: 528 F 530
           F
Sbjct: 597 F 597


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 153
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 64  MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRF 198
           M +   I    VS  AC    +PC  D Y D  D   +CN+ + K F
Sbjct: 1   MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNF 47


>Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical
           protein C07B5.5 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 360 QAEQLIFHLIYNNEEAVNVICDNLKYTEVFTSGTQTRYT 476
           Q ++ IFH++YN+E   +     +K  E+ ++   + YT
Sbjct: 95  QNDKTIFHVMYNDEPWGSKSTSGIKLEEILSNRVYSNYT 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,632
Number of Sequences: 27780
Number of extensions: 304689
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)