Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120877.seq
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41473 Cluster: Uncharacterized 30.6 kDa protein in IAP...   117   3e-25
UniRef50_O10327 Cluster: Uncharacterized 19.5 kDa protein; n=7; ...    70   6e-11
UniRef50_P41472 Cluster: Uncharacterized 11.5 kDa protein in IAP...    64   4e-09
UniRef50_Q7RF31 Cluster: Putative uncharacterized protein PY0488...    36   0.84 
UniRef50_A2R446 Cluster: Contig An14c0190, complete genome; n=10...    36   1.1  
UniRef50_Q8V5S7 Cluster: ORF70; n=3; Nucleopolyhedrovirus|Rep: O...    33   6.0  
UniRef50_A0EA50 Cluster: Chromosome undetermined scaffold_85, wh...    33   7.9  

>UniRef50_P41473 Cluster: Uncharacterized 30.6 kDa protein in
           IAP2-VLF1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 30.6 kDa
           protein in IAP2-VLF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 265

 Score =  117 bits (281), Expect = 3e-25
 Identities = 52/66 (78%), Positives = 53/66 (80%)
 Frame = +2

Query: 254 LETLQSEXXXXXXXXXXXXTCTFKDIITNFLNTKLDCRYDCADEYIKPNCIVDTYNCCNL 433
           LETLQSE            TCTFKDIITN LNTKLDC+YDCADEYIKPNCIVDTYNCCNL
Sbjct: 200 LETLQSELKLALADKDKLKTCTFKDIITNLLNTKLDCKYDCADEYIKPNCIVDTYNCCNL 259

Query: 434 VFKKET 451
           VFKKET
Sbjct: 260 VFKKET 265



 Score =  116 bits (279), Expect = 5e-25
 Identities = 54/57 (94%), Positives = 56/57 (98%)
 Frame = +1

Query: 10  DEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRT 180
           DEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKE +MKEYEQVYTLGRQLYEVLR+
Sbjct: 118 DEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKEVSMKEYEQVYTLGRQLYEVLRS 174



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 180 IFVDEPFKLWLERNTHEFDNNTDKI 254
           IFVDEPFKLWLERNTHEFDNN DKI
Sbjct: 175 IFVDEPFKLWLERNTHEFDNNKDKI 199


>UniRef50_O10327 Cluster: Uncharacterized 19.5 kDa protein; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 19.5 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 172

 Score = 69.7 bits (163), Expect = 6e-11
 Identities = 29/57 (50%), Positives = 46/57 (80%)
 Frame = +1

Query: 7   EDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLR 177
           +D+YTVDGL+LK  YV YY+ L+ +V+  V+ +SK+ +++E ++VY+L RQLYE+LR
Sbjct: 25  QDDYTVDGLRLKPAYVEYYRQLQEIVELAVITLSKQLDIREVQEVYSLARQLYEILR 81



 Score = 50.0 bits (114), Expect = 5e-05
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +2

Query: 311 TCTFKDIITNFLNTKLDCR---YDCADEYIKPNCIVDTYNCCNLVFK 442
           T TFK+ + N LN +L      YD +  YIKPNCIV T+ CC+L F+
Sbjct: 125 TNTFKNAVLNVLNNELSTDANLYDTSAGYIKPNCIVTTFTCCDLTFE 171


>UniRef50_P41472 Cluster: Uncharacterized 11.5 kDa protein in
           IAP2-VLF1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 11.5 kDa
           protein in IAP2-VLF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 99

 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 36/65 (55%), Positives = 39/65 (60%)
 Frame = +1

Query: 451 MNTSVDAVTKLIRLQNDVLA*CAKWXXXXXXXXXXXXXXXXXXXGKQFDFLDEMLTKKLI 630
           MNTSVD VTKLI LQN+VL    +                    GKQFDFLDEMLTKKLI
Sbjct: 1   MNTSVDVVTKLIHLQNNVLDIMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLI 60

Query: 631 ESNAM 645
           ESNA+
Sbjct: 61  ESNAI 65



 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = +3

Query: 510 MMREVDQYLNSDTPDYTIESLNAPGQTV*FFR*NANKK 623
           +MREVDQYLNSDTPDYTIESLNAPG+   F      KK
Sbjct: 21  IMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKK 58


>UniRef50_Q7RF31 Cluster: Putative uncharacterized protein PY04880;
            n=11; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY04880 - Plasmodium yoelii yoelii
          Length = 2294

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 191  VDKNVRKTSYNCLPNVYTCSYSFMLVSLL-TYITKKS--TSIFKHL*YATYFDLSFKPST 21
            + KN+ K +Y    N+Y CS + + V    +YI K+     I++H     Y +LS K S 
Sbjct: 1595 IKKNLNKINYELFKNLYKCSLTIISVIFAHSYINKEDALNFIYQHFDDIKYLNLSTKSSL 1654

Query: 20   VYSS 9
            +Y +
Sbjct: 1655 LYKN 1658


>UniRef50_A2R446 Cluster: Contig An14c0190, complete genome; n=10;
           Pezizomycotina|Rep: Contig An14c0190, complete genome -
           Aspergillus niger
          Length = 1786

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 194 LVDKNVRKTSYNCLPNVYTCSYSF--MLVSLLTYITKKSTSIFKHL*YATYFDL 39
           L ++  R  +YNCL  + TC  SF   LVS+L+  T  + SI K   + TY  L
Sbjct: 780 LNERQTRFLTYNCLDFIVTCLQSFNESLVSVLSQPTVSTDSIVKQSTFVTYIRL 833


>UniRef50_Q8V5S7 Cluster: ORF70; n=3; Nucleopolyhedrovirus|Rep:
           ORF70 - Helicoverpa zea SNPV
          Length = 152

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 16/52 (30%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
 Frame = +1

Query: 37  LKSKYVAYYKCLKILVDFLVMYVSKE-TNMKEYEQ-VYTLGRQLYEVLRTFL 186
           LK+ Y+AYY+ +K L++ +V +VS +     +Y++ V+T+   L  +++ F+
Sbjct: 24  LKTNYIAYYQQIKKLINLIVAFVSNDNVTADDYKEFVHTVVELLDYIIQDFV 75


>UniRef50_A0EA50 Cluster: Chromosome undetermined scaffold_85, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_85,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 604

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 453 HVSFLKTKLQQLYVSTIQFGLIYSSAQSYLQSN 355
           ++S   T+LQQ Y STI+FG +    + YL++N
Sbjct: 151 NMSHFSTELQQKYFSTIRFGTVQCINREYLKNN 183


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,576,915
Number of Sequences: 1657284
Number of extensions: 11606857
Number of successful extensions: 32247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32232
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)