Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120877.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    29   0.76 
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    27   3.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   4.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   7.1  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 326 DIITNFLNTKLDCRYDCADEYIKPNCIVDTYNCCNLVF 439
           D+++   ++K D + D  D   + N + + YNC N+ F
Sbjct: 63  DLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFF 100


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 58  YYKCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRTFLSTSRSNC 207
           Y  CLK       +++SKET M  +  +     Q Y   R  LS + +NC
Sbjct: 188 YLACLKACSILAQLFLSKETLMLSFRSLLQTKDQ-YAEFREELSGATTNC 236


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 492  AERRVGMMREVDQYLNSDTPDYTIESLNAPG 584
            A  ++    +++ Y NSD  DYT+   ++PG
Sbjct: 1143 AHHKIHYGEDLNIYDNSDDTDYTVNDRSSPG 1173


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 61  YKCLKILVDFLVMYVSKETNMKEYEQVYTL 150
           Y C+ +   F++ +++KET     E+V  L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,442
Number of Sequences: 5004
Number of extensions: 52620
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)