Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120877.seq
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)               27   9.9  
SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 519 RASCQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 415
           R+ C     QT +  H +HGR  V+ L T   QLY
Sbjct: 403 RSICLTAEQQTQKSLHGLHGRTGVTQLVTHQNQLY 437


>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
          Length = 535

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 226 CVLRSSHSLNGSSTKMCAKPRTTVCLTCTLARILSC 119
           C+LR + ++ G   + C+K +T+ C+    A +  C
Sbjct: 364 CILRGAATMQGCMREGCSKTQTSKCILRGAATMQGC 399


>SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 144 HVRQTVVRGFAHIFVDEPFKLWLERNTHEFDNNTDK 251
           H R   V  +  ++  +  KLW+E  + EFD N+D+
Sbjct: 366 HTRDNWVTKYKVLYSHDN-KLWMETQSAEFDGNSDR 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,717,822
Number of Sequences: 59808
Number of extensions: 402800
Number of successful extensions: 1192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)