Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120877.seq
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical p...    29   3.8  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    28   6.6  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    28   6.6  

>AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical
           protein Y47H9C.8 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 29/135 (21%), Positives = 62/135 (45%)
 Frame = +1

Query: 13  EYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRTFLST 192
           E T+D  KLK   + + K +  + +  +  +S+E +        T+  +L  +   FL  
Sbjct: 68  EKTLDDEKLKELTLKFAKNVPTMANISIWNLSEELSTG------TIDSRLVVIGNAFL-- 119

Query: 193 SRSNCGWNATRTNLTTIQTKFRNFTERIETCAGR*RQIENVHVQRYHHQFLEHEIGLQIR 372
                 WN  +T++++I+ KF N+  +I T +     ++++       +  EH I  +  
Sbjct: 120 ------WNLLKTSMSSIREKFENYKFKIHTMSATSSSLQSIDFSSSRIRAGEHCI-QETE 172

Query: 373 LRRRVY*AELYSGHV 417
           + R++   E+Y+  V
Sbjct: 173 IFRKMDLLEIYNSVV 187


>Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical
           protein F47B8.9b protein.
          Length = 257

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 149 NVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 54
           NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 25  NVAACLILIPLISISTFILLKGKTILKHMKYA 56


>Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical
           protein F47B8.9a protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 149 NVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 54
           NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 25  NVAACLILIPLISISTFILLKGKTILKHMKYA 56


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
           protein Y18D10A.13 protein.
          Length = 2417

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 73  KILVDFLVM-YVSKETNMKEYEQVYTLGRQLYEVLRTFLSTSRSNCGWNATRTNLT 237
           + L+DFLV  +    TN+   + V  L R L+ VLR  +S +R    W   R+  T
Sbjct: 250 RYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRRDMSLNRRLYTWLINRSGET 305


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 2417

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 73  KILVDFLVM-YVSKETNMKEYEQVYTLGRQLYEVLRTFLSTSRSNCGWNATRTNLT 237
           + L+DFLV  +    TN+   + V  L R L+ VLR  +S +R    W   R+  T
Sbjct: 250 RYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRRDMSLNRRLYTWLINRSGET 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,632,207
Number of Sequences: 27780
Number of extensions: 310876
Number of successful extensions: 1036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)