Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120877.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 44  DLSFKPSTVYSSSC 3
           D+S+KP  +Y SSC
Sbjct: 145 DVSWKPPAIYKSSC 158


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 370 VSAIQFRVQEIGDDIFERARFQFVFIGQRKFQ 275
           +S I+  +++I  +I+ER   ++++I   K+Q
Sbjct: 351 ISGIKI-IKQISSNIYERQNNEYIWIVSNKYQ 381


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +2

Query: 359 DCRYD-CADEYIKPNCIVDTYNC 424
           +CR   C    ++P C+V  Y C
Sbjct: 241 ECRLKKCLTVGMRPECVVPEYQC 263


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -3

Query: 429 LQQLYVSTIQFGLIYSSAQSYLQSNFVFKKLVMISLNV 316
           +  LY+  +  G+I    + ++Q  + FK+  M   N+
Sbjct: 126 IYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNGNNI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,493
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)